Pairwise Alignments

Query, 1265 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  361 bits (927), Expect = e-103
 Identities = 298/849 (35%), Positives = 412/849 (48%), Gaps = 78/849 (9%)

Query: 415  AEGRVVRMVGAHTDITRDKLTEEELRLAKQTLDDAIEAVPEGLAYFDAD--------DRL 466
            A+   +R    H ++  ++ T E + LAK   D    A  E  A FDA         DR+
Sbjct: 367  AQNETIRQERDHLEVLVEERTAELVGLAKSLRD----ANQEQQAVFDAARIGIILTRDRI 422

Query: 467  IL-CNERYREAHPLTAPLMVPGRPFEDILR-------AAVANGEFAGNPDGPNDETWIQA 518
            I  CN    E          PG   E   R         +A GE     +G     + + 
Sbjct: 423  IRRCNRTIEEILGYE-----PGEILEQSTRIWYPDEATFLAVGERVR--EGLTRHGYFRE 475

Query: 519  ELAQHRNPGAPFERELPDGRWIVVAENRTSNGSLVCTRTDITERKRFEAELQRQAADMCA 578
            EL   R  G+ F   +      V+  N    G +  T  DI E +R  AE+ +       
Sbjct: 476  ELELVRKDGSRFWGRIMAQ---VIDRNAPEKG-MAGTVEDIGEERRILAEMAQA------ 525

Query: 579  LAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIQGMTELLFDTPLTDEQ 638
                           +A AEAA QAK++FLA MSHEIRTPMN + GMT L   T L + Q
Sbjct: 526  ---------------KALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQ 570

Query: 639  RQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDAADLVEGVVELLTPRAHEKG 698
            R++ + I+ SS  LL IINDILD SK EAG++ IE + FD   ++E V  L++ RA  KG
Sbjct: 571  REYLRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKG 630

Query: 699  IEIGFYIDPLLRRTLLGDPTRIRQILVNLVGNAVKFTDRGSVAVELEVLDATDAHLVLRI 758
            +E    +   + R L+GDP RI Q+L+N   NAVKFT+RG VA+ + + +     ++LR 
Sbjct: 631  LEFVIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRF 690

Query: 759  TVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSELMGGSIAVESSLG 818
             V DTGIGI A  +PTLFN FQQ D S TRK+GGTGLGL I ++L+ELMGG +  ES  G
Sbjct: 691  AVHDTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPG 750

Query: 819  IGSRFLVDLPLALSEEA--LPPAEQPLAGRSVLVVDDLAVNRRVLASMLDSLGAWPTCVE 876
             GS F     L  S  A    P    L  R +LVVDD    R V+  ML S+    +  +
Sbjct: 751  RGSTFWFTARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTD 810

Query: 877  SGPDALEALRRGAAGGRPFDVVLADQTMPGMGGDTLLATVAGDPALIGTRRVLIVTLGPA 936
            SG   L  L+R +A G P+D+V  D  MP M G   LAT      L   +  L++ +   
Sbjct: 811  SGNRCLAELQRASAAGEPYDIVFLDWQMPEMDG---LATAREIRRLELPQPPLVLMITAY 867

Query: 937  VRGESGPAPGLA-----HATLNRPLRQSSL-AACLTGLFAAAAPAASAVPSAEAKVEDVL 990
             R E   + G +        L +P+  S L    +  L     P ++A P A   +   L
Sbjct: 868  GRDELARSAGESGLQGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAP-L 926

Query: 991  RRGRILLAEDNRTNQLFATTLLRRLGYTVEVAEDGEQAVAAACRGGLDLVLMDVQMPGMD 1050
               R+LL EDN+ NQ  A+  L      V+VA+DG  A+    +   D++LMD+QMP MD
Sbjct: 927  AGLRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMD 986

Query: 1051 GLEAAQAIRARGGALAGLPIIALTADAMPGTRELCLRAGMSDYLTKPISRAGLLSALDRW 1110
            G+ A + IR +  A A LPI+A+TA+AM   RE CL AGM+D++ KP+    LL  L +W
Sbjct: 987  GIAATREIRRQFPA-AVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKW 1045

Query: 1111 IGTAEP---PAAAAEAGG---GSGKGSAAVNDDGSGEDGEALDEAVLDDLVETVGADSLA 1164
            +    P   P AAA   G    +   +A    D     G    +A L  L + +  + L 
Sbjct: 1046 LAPGAPLVAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATL-GLHQALDREGLY 1104

Query: 1165 L-IVDSFLEDVSHRLERLSAMDDAMPAGTVDLRALAQEAHDLSSLAGSFGGMAVMHIAWR 1223
            L ++D F+       +RL+   DA      D     +EAH L  ++   G M +  +A  
Sbjct: 1105 LRLMDKFVSGQRDAPQRLARAIDA-----GDWVGAEREAHTLKGVSAQIGAMPLRDLAEG 1159

Query: 1224 MEVLCRNGD 1232
            +E   R  D
Sbjct: 1160 LEHAIRQRD 1168



 Score = 38.5 bits (88), Expect = 4e-06
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 209 IRRWSDEVYRILGLPPQQQQPTVELSRACYHPDDRKPLADLVERARK--TGEG-FSIEAR 265
           IRR +  +  ILG  P +    +E S   ++PD+   LA + ER R+  T  G F  E  
Sbjct: 423 IRRCNRTIEEILGYEPGE---ILEQSTRIWYPDEATFLA-VGERVREGLTRHGYFREELE 478

Query: 266 VIRPGGALRHVFIRGMAECGDDGRPV-GLLGVVQDITDAKREEAELRSNRELLDLTVQAT 324
           ++R  G+    + R MA+  D   P  G+ G V+DI + +R  AE+   + L +   QA 
Sbjct: 479 LVRKDGS--RFWGRIMAQVIDRNAPEKGMAGTVEDIGEERRILAEMAQAKALAEAAAQAK 536

Query: 325 RD 326
            D
Sbjct: 537 AD 538