Pairwise Alignments
Query, 394 a.a., hypothetical protein from Azospirillum sp. SherDot2
Subject, 1870 a.a., mannuronan C-5-epimerase, putative from Pseudomonas fluorescens FW300-N2E2
Score = 61.6 bits (148), Expect = 2e-13
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 30/140 (21%)
Query: 21 NIQGGTITGATPDQLVITYPGNRFTDLRGNFTYDPLTKALTGGTVTSVTNASNGVLDVAV 80
N +GGT+ + TY + D GN + + G + S ASN + + +
Sbjct: 480 NGRGGTLQVSYSASSDRTYIKDYDADASGN-----RFELILSGNLASTLTASNFIFNRVI 534
Query: 81 SDLNLPVATALNWASTGTSPEAIRAALLGGNDSLSGSELNDTLRGYAGDDTIKGGMGDDL 140
TGTS G+DSL GS+ DTL G AG+D++ GG GDD
Sbjct: 535 ---------------TGTS----------GSDSLLGSDAADTLLGLAGNDSLSGGAGDDK 569
Query: 141 LDGGSGINVIDGGDGSNDTV 160
LDGG+G++ + GG G++ V
Sbjct: 570 LDGGAGMDTLTGGAGADTFV 589
Score = 57.4 bits (137), Expect = 3e-12
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 13 NTDALDVTNIQGGTITGATPDQLVITYPGNRFTDLRGNFTYDPLTKALTGGTVTSVTNAS 72
N + L V + TG D + GN D R +AL+G TV T+A
Sbjct: 1642 NVENLYVDSAGAANGTGNALDNTLFAGAGNNVLDGRDGIDTASFERALSGVTVNLSTSAQ 1701
Query: 73 NGVLDVAVSDLNLPVATALNWASTGTSPEAIRAALLGGNDSLSGSELNDTLRGYAGDDTI 132
+ + L E ++ + D+LSG+ + L G AG+DT+
Sbjct: 1702 QNTVGSGLDTLKFI--------------ENLKGSAYA--DTLSGNSAANVLDGGAGNDTL 1745
Query: 133 KGGMGDDLLDGGSGINVIDGGDGSNDTVARHASLADSGAVKYNGEIYVIDANGYDRL 189
GG GDD L GG+G + + GG G+ DT A +L+D G I + +D+L
Sbjct: 1746 VGGSGDDRLIGGAGTDNLTGGTGA-DTYA-FGALSDMGVGALRDMISGFKSTEFDKL 1800
Score = 56.6 bits (135), Expect = 6e-12
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 30/130 (23%)
Query: 53 YDPLTKALTG-------GTVTSVTNASNGVLDVAVSDL------NLPVATALNWASTGTS 99
+D T+ +G GT AS+G + VSD ++P T +N GT
Sbjct: 745 FDAATRTFSGTPPDTASGTYAIQVTASDGS-NATVSDSFTLAVQDVPTTTVIN----GTP 799
Query: 100 PEAIRAALLGGNDSLSGSELNDTLRGYAGDDTIKGGMGDDLLDGGSGINVIDGGDGSNDT 159
ND+L+G+ N+ L G AG+DT+ GG G+D+L GG+G++ + GG G++
Sbjct: 800 ----------NNDTLTGTAANEQLFGGAGNDTLNGGAGNDILVGGTGVDKLTGGTGAD-- 847
Query: 160 VARHASLADS 169
V R+ S DS
Sbjct: 848 VFRYTSKLDS 857
Score = 56.2 bits (134), Expect = 8e-12
Identities = 70/240 (29%), Positives = 106/240 (44%), Gaps = 33/240 (13%)
Query: 3 SVSAGSQSSLNTDALDVT-NIQGGTI--TGATPDQLVITYPGNRFTDLRGNFTYDPLTKA 59
+V++ S + N D L T + GT T + + +T+ G + GN YD L KA
Sbjct: 972 TVASNSFTDANQDVLTYTATLTNGTALPTWLSFNATSLTFSGTPTSTAAGN--YDILVKA 1029
Query: 60 LTGGTVTSVTNASNGVLDVAVSD-LNLPVATALNWASTGTSPEAIRAALLGGNDSLSGSE 118
T + AS VSD +L VA A TGT+ ++L+G+
Sbjct: 1030 ------TDPSGAS-------VSDNFSLVVADAPANTITGTN----------NAETLNGTT 1066
Query: 119 LNDTLRGYAGDDTIKGGMGDDLLDGGSGINVIDGGDGSNDTVARHASLADSGAVKYNGEI 178
D + G G+DTIK G G D++DGG+G + + GGDG++ R+++L+DS G +
Sbjct: 1067 GADLILGLGGNDTIKAGTGADIVDGGAGRDSLYGGDGAD--TFRYSNLSDSYRDYDTGGV 1124
Query: 179 YVIDANGYDRLTNVEFIQYTDQTVAGASAPVFDGLSYIAANPDLAAAYGMDSEAAFDHYR 238
D YD V+ I + G +G Y+ N Y +EA D R
Sbjct: 1125 TATDTI-YDFTVGVDKIDVSGLGFLGL-GDGSNGTLYMTLNTAGDKTYIKSAEADADGNR 1182
Score = 50.4 bits (119), Expect = 4e-10
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 110 GNDSLSGSELNDTLRGYAGDDTIKGGMGDDLLDGGSGINVIDGGDGSN 157
GND+L GS ++ G AG+DTI G G D+L GG+GI+ + GG G++
Sbjct: 389 GNDTLLGSAASEIFYGGAGNDTINGAAGGDILVGGAGIDKLTGGTGAD 436
Score = 47.8 bits (112), Expect = 3e-09
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 15 DALDVTNIQGGTITGATPDQLVITYPGNRFTDLRGNFTYDPLTKALTGGTVTSVTNASNG 74
D D QGG I+G D ++ GN D G+ D +T G + V NA +
Sbjct: 1475 DIFDNAQNQGGMISGTDQDDTLVGSSGNDTID--GDLGADTMTGG-DGNDIYVVDNALDS 1531
Query: 75 VLDVAVSDLNLP-VATALNWASTGTSPEAIRAALLGGNDSLSGSELNDTLRGYAGDDTIK 133
VL+ S + V +++W + G + E + +L G + G+ G + I
Sbjct: 1532 VLETNTSTAQIDTVQASVSW-TLGANLENL---VLTGVSDIDGT-------GNERRNFIT 1580
Query: 134 GGMGDDLLDGGSGINVIDGGDGSNDTVARHA--SLADSGAVKYNGEIYVIDAN--GYDRL 189
G +++LDG +G + + GGDG++ V +A S+ ++ + G I + ++ Y
Sbjct: 1581 GNAANNVLDGAAGNDSMSGGDGNDSYVVDNADDSVIETNSNTVTGGIDSVHSSLAAYTLG 1640
Query: 190 TNVEFIQYTDQTVAGASAPVFDGLSYI-AANPDLAAAYGMDSEAAFD 235
NVE + A + D + A N L G+D+ A+F+
Sbjct: 1641 NNVENLYVDSAGAANGTGNALDNTLFAGAGNNVLDGRDGIDT-ASFE 1686
Score = 40.4 bits (93), Expect = 4e-07
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 114 LSGSELNDTLRGYAGDDTIKGGMGDDLLDGGSGINVIDGGDGSNDTVARHASLADSGAVK 173
+SG++ +DTL G +G+DTI G +G D + GG G ++ + + + + S A V+
Sbjct: 1487 ISGTDQDDTLVGSSGNDTIDGDLGADTMTGGDGNDIYVVDNALDSVLETNTSTAQIDTVQ 1546
Query: 174 YNGEIYVIDANGYDRLTNVEFIQYTDQTVAGASAPVFDGLSYIAANPDLAAAYGMDSEAA 233
+ + + AN L N+ +D G F ++ AAN L A G DS +
Sbjct: 1547 ASVS-WTLGAN----LENLVLTGVSDIDGTGNERRNF--ITGNAANNVLDGAAGNDSMSG 1599
Query: 234 FDHYRSF 240
D S+
Sbjct: 1600 GDGNDSY 1606
Score = 36.6 bits (83), Expect = 6e-06
Identities = 31/149 (20%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 11 SLNTDALDVTNIQGGTITGATPDQLVITYPGNRFTDLRGNFTYDPLTKALTGGTVTSVTN 70
S + + +D T + ++ GA P+ ++ +Y + G + ++ + G ++
Sbjct: 280 SNHVEIIDNT-LNNNSLGGAVPEIIIQSYDDT--LGVSGKY-FNGSDNLIQGNIISGSDL 335
Query: 71 ASNGVLDVAV--SDLNLPVATALNWASTGTSPEAIRAALLGGNDSLSGSELNDTLRGYAG 128
++ GV + +D N +A ++ S G + + G +S + T++G AG
Sbjct: 336 STYGVAERNEDGTDRNAIIANTISHTSKGAT------LVYGDGSYVSATVPMTTVQGTAG 389
Query: 129 DDTIKGGMGDDLLDGGSGINVIDGGDGSN 157
+DT+ G ++ GG+G + I+G G +
Sbjct: 390 NDTLLGSAASEIFYGGAGNDTINGAAGGD 418