Pairwise Alignments

Query, 1311 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 1686 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  392 bits (1007), Expect = e-112
 Identities = 327/942 (34%), Positives = 470/942 (49%), Gaps = 77/942 (8%)

Query: 257  IRTDITERKRMEAELEDSRRFLQSITDSMGEGVFSLDRNGFCTFLNPEAERLLGWSLEEL 316
            +  DI +R   E +L  S    Q++ DS  +     DR G     N     LL +  +  
Sbjct: 689  LNKDIAQRIHTEEQLSLSMNKFQALFDSAVDACVITDRQGVIIECNSALLSLLKYQHKH- 747

Query: 317  RGITLHDAVHYKDGQGRPVAGKDCTVLNSVRLGEIH-----RSETDHFVRRDGTIFPIAI 371
            + I     V+Y    G      D   L   RL  +      R E D FV     I  + +
Sbjct: 748  QLIGRRTLVYYPPHLGET----DSETLFEQRLQTVLEQGQLRFEAD-FVTSMAEIVNVEV 802

Query: 372  TAVPLREDGRIVGSVTVFQDITERQRMLTALQESEERLTVALDASITGLWDWNPVTDHAY 431
            T   +  +G +    T + D++ER+ M   L+   + L   L  S  G+W         Y
Sbjct: 803  TLKRIELNGSLFVLGT-YHDLSERKLMNALLERERDLLKHVLGRSPIGVWICIEGVCR-Y 860

Query: 432  FSDLWLGMLGYAPGELPGRGATWLALLHEGDRDRVLATLEDHVAGRAPVYEVEFRMRHKS 491
             ++    M G   G+     + +       D    ++ L+  ++  + V+E +       
Sbjct: 861  VNEQITEMTGLQVGQ-----SVYPIFAQPDDYRCHISELD--LSQDSTVFETQLFDCKGQ 913

Query: 492  GAWVWILSAGKVTDRDADGLPTRITGIHKDVTDRKRTEDELARAKEEADRANRQKSDFLA 551
               V + +   V D     L   +     D+TD K  +DELA AK+ A+ ANR KSDFLA
Sbjct: 914  RRDVLLTAYHTVQDGQNANLCWAL-----DITDTKSIQDELAIAKDAAEAANRAKSDFLA 968

Query: 552  NMSHEIRTPMNAVIGLSHLMMKTELTPRQRDYLDKIHASSRSLLGIINDILDFSKVEAGK 611
            NMSHEIRTPMNA++G+S+L+++TEL+ +QRDY+ K+H ++ SLLGI+NDILDFSK+EA K
Sbjct: 969  NMSHEIRTPMNAILGMSYLVLQTELSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEK 1028

Query: 612  LTIETIPFHIGDVLQEVATVVLPKVREKGLELIVDLHGGVPGTLVGDPLRLGQVILNLVS 671
            + IE   F + DVL  +A VV  KV EK +  I DL   +P    GD LRLGQ+++N  +
Sbjct: 1029 MDIECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCN 1088

Query: 672  NAVKFTERGEVAVTVGGRIGTADDYRLEVEVCDTGIGMSPEQAAALFRPFTQADSSTTRR 731
            NAVKF+      V         +   L   V D GIG+  ++   LF  F Q D+ST+R 
Sbjct: 1089 NAVKFSHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSRE 1148

Query: 732  FGGTGLGLAICRQLVELMGGTVSVESRPGEGSIFRFSIRCRVAAGDTTD-DRLPSDLMDR 790
            +GGTGLGLAIC++L  LMGG V  ES  G GS  RF +R  +   DT D + L   L   
Sbjct: 1149 YGGTGLGLAICKRLAHLMGGEVWCESELGVGS--RFYVRLTLDCADTYDPNALFDPLAGE 1206

Query: 791  RVLVVDDSDAVRSILTDMLERFGLTVES--VGDGLAALRRVEEGQTGIGPPVELVVLDWR 848
               ++     +  +LT       + VES  VG  +A L++    Q        L++ D+ 
Sbjct: 1207 TAKLIGLHPRLDKLLTIHGVSANMQVESADVGTVIAQLKQSSTRQ--------LLICDYS 1258

Query: 849  --MPELDGVETLRRLRALPGAQPPVVMTTAYGADGVQGALDCALENNGAAGPDRPVTAVL 906
              +PEL        L AL   Q   ++     +D  Q +L   +ENN     DR ++   
Sbjct: 1259 AFVPEL--------LEALAVNQASRMLLIGQLSD--QDSLRQLIENN-----DRVISQT- 1302

Query: 907  EKPVTPSAMFDSVMMALGGAAARPAESARRV-HDPAQSTELSALVGRSVLLVEDNLVNQQ 965
             KP+TP A+ ++++  LG      +E  R+V  D +     + L G  VLLVEDN +NQ+
Sbjct: 1303 -KPLTPIAIGNALLSLLG----HQSEDGRQVQQDHSLHALKTQLAGAEVLLVEDNQLNQE 1357

Query: 966  VACGLLELVGIEATVVGSGEEALQCLREVKFDLVLMDVQMPGLDGYETTRLIRRKLELSS 1025
            +A  LL   GI  TV   G EA++ + +  FD VLMD QMP LDGYE TR IR   + ++
Sbjct: 1358 LAVELLRQAGINVTVANHGLEAIERVEQQYFDCVLMDCQMPVLDGYEATRRIRELPQFAN 1417

Query: 1026 LPIVAMTAHAMAGDRERCLDSGMNDHVSKPIDPETLYAALARWLKPVRGLGGGAAAATGN 1085
            LPI+AMTA+AM+GD E+ L  GMND ++KP+  + LY  +ARW+ P +            
Sbjct: 1418 LPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWITPKQ-----------R 1466

Query: 1086 AAMPAVSAVSA-AQALPDSLPALDLAVARRNVNGNLALLRRILIDFAATHEGEAVRLSTA 1144
             ++P V   S  AQ LP  L  L +     + + N +L   +L  F  T +    +   A
Sbjct: 1467 KSVPLVLKRSTHAQDLP-QLEGLSIQNGLSHCDHNESLYSHLLGLFINTSKTLLGQQQRA 1525

Query: 1145 VCEGRWKDVLRLS-HTLKGTAATIGAMELSELAGRVEAGAMT 1185
              E    D LRLS HTLKG AA +GAME+S LA  +E   +T
Sbjct: 1526 WQEEN-ADELRLSLHTLKGVAANVGAMEISRLASELELQCLT 1566