Pairwise Alignments

Query, 414 a.a., Tetracycline resistance protein, class C from Azospirillum sp. SherDot2

Subject, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 77.0 bits (188), Expect = 1e-18
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 8/167 (4%)

Query: 20  LDIVAMGIVIPVLPALIEEFAGADAQAGTINGALVALWALMQFFSSPVIGSLSDRFGRRP 79
           L  V   ++    PA++ +       +    G ++A  A     S PV G L D++GR+P
Sbjct: 23  LAAVDQTLLATATPAIVRDLGNLQLSSWIAIGYMLASAA-----SVPVYGWLGDQYGRKP 77

Query: 80  VILLSALGLAADYVLMAVAPNLWWLVLGRAVAGITSSSFTTVF-AYMADVTPPEQRARAY 138
           +++++    A   V+ A A N+ WLV GR V G+ S    ++  A + ++ PP +RAR  
Sbjct: 78  MLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQALIGELVPPRERARFQ 137

Query: 139 GLIGAAFSAGFIAGPLLGGVL-GEISPRAPFWGAGLLSGLAFLYGLA 184
           G   + F+   I GP+LGGVL   +S +  FW    L G+A LY LA
Sbjct: 138 GYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIA-LYRLA 183



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 253 DVG-LLLSMVGALDMLVQGLVVSRVVKWLGD----RGTMIVGLFGGAVGLACMGLAPDGG 307
           D+G L LS   A+  ++       V  WLGD    +  +++ L   A+G      A +  
Sbjct: 41  DLGNLQLSSWIAIGYMLASAASVPVYGWLGDQYGRKPMLMIALSIFALGSVICAFAMNMP 100

Query: 308 WF-AFAIVPNALWGLAMPTIQSLMTQRVGSSEQGQLQGANMSVASVAGILSPVFFGTV 364
           W  A  IV     G  M   Q+L+ + V   E+ + QG   S+ +VA I  PV  G +
Sbjct: 101 WLVAGRIVQGLGSGGLMSLSQALIGELVPPRERARFQGYFSSLFAVASIGGPVLGGVL 158



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 320 GLAMPTIQSLMTQRVGSSEQGQLQGANMSVASVAGILSPVFFGT-VYSASVGIDPLFPHP 378
           G  MP+ Q L+    G +  G++        S+   +   FFGT +YS   G+ P     
Sbjct: 371 GTVMPSTQVLVQTLAGKANLGRITAMASLSRSLGASVGTAFFGTLIYSLLPGLSPNSGLQ 430

Query: 379 GAA--------------FLIAALVMLAGAV 394
             A              F +AAL+ L GA+
Sbjct: 431 AIAALPQSEILHAFQIGFAVAALLALLGAL 460