Pairwise Alignments

Query, 390 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 338 a.a., flagellar motor switch protein FliM from Rhodanobacter denitrificans FW104-10B01

 Score =  142 bits (357), Expect = 2e-38
 Identities = 81/327 (24%), Positives = 166/327 (50%), Gaps = 10/327 (3%)

Query: 68  LSQEEIDRLLNF---GAPEGGGPEMSAIQRLVSSTTVNKDR-----LPMLDVVFDRMVRM 119
           LSQ+EID LL+    GA   GG +      +++     +DR     LP L++V +R  R 
Sbjct: 5   LSQDEIDALLDGVSGGAVATGGDQPPPSDAVIAYDFTQQDRIVRGRLPTLEMVNERFARF 64

Query: 120 LNTSLRQFASTNVEASLSKIEWLRYTDFQDAIELPALIGVARAEPWDNQMLVTIDSALIY 179
               +        E S+  ++ +++ ++  ++ +P+ + + R +P     LV  +  L++
Sbjct: 65  FRLGVFNVLRKTCEVSVLGVKMVKFAEYVHSLAVPSNLNLVRIKPLRGTALVVFEPRLVF 124

Query: 180 CMMDVLLGGRRSRPGRIDGRAYTSIERKMTERMMKVVLQDLGQSFDPLAQVDFVFDRLEV 239
            ++D   GG      RI+GR +T+ E ++ + M++ +   + +++ P+ ++ F +   E+
Sbjct: 125 TVIDNFFGGDGRYHARIEGRDFTATENRVIQIMLEELFGAMTEAWAPVLELQFEYQNSEI 184

Query: 240 NPQFATITRATNAIIRVRIAVEVERRTGHIDIVIPYATLEPVRGKLVQMFMGEKFGHDSV 299
           NPQFA I   T  ++  R  VE++   G I + +PYA +EP+R  L      ++   D  
Sbjct: 185 NPQFANIVSPTETVVVSRFHVELDGGGGEIHLSLPYAMVEPIRTLLDAGVQSDRADRDDR 244

Query: 300 WESHLKNELMRSKLELVAVLAETKVPLGEVLAWQKGQSLKLRISPDQTVLVFSKTIPLFA 359
           W   L+ E+  ++++L ++L + ++ LGE L  + G  + +++   +   V+++ +P+F 
Sbjct: 245 WAEMLQEEVFDAEVDLSSLLLDVQLSLGEFLHLRPGDVIPVQL--PELATVYAEDVPVFR 302

Query: 360 GHMGQRNDNIAVKIDTDLDTKQELIDG 386
           GH GQ     AV+       +++   G
Sbjct: 303 GHYGQSGGRNAVRFHAQAGRREKRAAG 329