Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 190 a.a., RNA polymerase sigma-E factor from Pseudomonas fluorescens FW300-N2E2

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 5/169 (2%)

Query: 55  GDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYDPAKAEAATWV 114
           GD  +F  L+A     +  +++ L   A+ AE++ QDT LS+ R A      +A   TW+
Sbjct: 20  GDGASFEVLYARHRQGLYRFLVSLSNKAELAEEIFQDTWLSLIRSAT-QPQGRASFRTWL 78

Query: 115 FTIARNLRIDALRRE--RHP--EVSDDELLEHEDDRPPADELLDGDRRARRLRGALAALT 170
           F IARN  ID  R++   +P  +  D++L    DD    ++ L   R   RL  AL AL 
Sbjct: 79  FQIARNRLIDHWRKQGVHNPLHDSYDEQLHVQPDDTTSPEQQLSLSRDQARLDAALQALP 138

Query: 171 PEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKALGDD 219
            +Q EV  L    DL  P IA     PL TVKSRLR A  K+ + L ++
Sbjct: 139 EDQREVFLLRLHGDLELPQIAALTGAPLETVKSRLRYAQQKLHRLLAEE 187