Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 189 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 85.1 bits (209), Expect = 8e-22
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 49  LVAVAAGDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYDPAKA 108
           +  +A GDR A   L+     +V  + L+L    Q AEDL  +  L VWR+A  ++  ++
Sbjct: 13  IARIAQGDRVAMQVLYGRHHVKVFRFGLRLVRNEQIAEDLISEVFLDVWRQAGKFE-GRS 71

Query: 109 EAATWVFTIARNLRIDALRRERHPEVSDDELLEHEDDRPPADELLDGDRRARRLRGALAA 168
             +TW+  I R   + ALRR +  E+ D+     ED     +  +        LR  L++
Sbjct: 72  SVSTWLLAITRFKALSALRRRKDAELDDEAAAAIEDPSDDPEIAVQKKDTGEALRKCLSS 131

Query: 169 LTPEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKAL 216
           LTPE  E+V L ++ + +   +AE + +P  TVK+RL  A  K+   L
Sbjct: 132 LTPEHREIVDLVYYHEKSIEEVAEIVGIPENTVKTRLFYARKKLADLL 179