Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 189 a.a., RNA polymerase sigma factor from Marinobacter adhaerens HP15

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 38  DDPAAARLSADLVAVAAGDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVW 97
           D  +    SA L A A G+R AF  L+   AP+++  +L++      A DL QD  L +W
Sbjct: 6   DSSSVFDYSACLCACARGERYAFHTLYQVEAPKIRGIILRIVGNPDLASDLTQDVFLKIW 65

Query: 98  RKAQLYDPAKAEAATWVFTIARNLRIDALRRERHP--EVSDDELLE----HEDDRPPADE 151
            KA  +D  ++    W+ ++AR+  +D +RR   P  + S +++ E      D+R  A+ 
Sbjct: 66  DKAHTFDAQRSRGRAWIHSVARHHALDEIRRRAQPLNQTSSEQVEELPSLVNDERILAN- 124

Query: 152 LLDGDRRARRLRGALAALTPEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAK 211
            L+ +     L   L  L  ++   + ++F     H  I++R+  PLGTVKS  R ++  
Sbjct: 125 -LELNEATVNLSECLKRLETDRRTAIYMAFVEGHTHEEISKRMGTPLGTVKSWARRSLKF 183

Query: 212 IRKAL 216
           +R  L
Sbjct: 184 LRDCL 188