Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 189 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

 Score =  109 bits (273), Expect = 3e-29
 Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 44  RLSADLVAVAAGDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLY 103
           RL   L  VA G+++A   L+A  A ++    L++    + AED+ QD  L VW KA  +
Sbjct: 13  RLVGTLSRVARGEQEALRELYAATASKLFGVCLRISHDREAAEDILQDVYLKVWNKAGRF 72

Query: 104 DPAKAEAATWVFTIARNLRIDALRRER-HPEVSDDELLEHEDDRPPADELLDGDRRARRL 162
           D A+A   TW+  IARN  ID  R  R  P + +D      DDR  A E +   +   R+
Sbjct: 73  DAARASPITWLCAIARNTAIDWRRANRAEPLLREDAAAHIADDRATAAEQIGEAQDRARI 132

Query: 163 RGALAALTPEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKALGDD 219
              L AL   Q   +R +FF    +  +A+R+ VPLGT+KS +R  + ++R  LGDD
Sbjct: 133 FHCLDALEARQGSAIRAAFFDGFTYAQLADRMKVPLGTMKSWVRRGLIQLRDCLGDD 189