Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 189 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  151 bits (382), Expect = 7e-42
 Identities = 81/170 (47%), Positives = 112/170 (65%), Gaps = 5/170 (2%)

Query: 50  VAVAAGDRQ---AFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYDPA 106
           V +A  DRQ   AFARLF HFAPR+KA+++K G     AED AQD M +VW+KA ++DP+
Sbjct: 20  VMLAIRDRQDTAAFARLFRHFAPRIKAFLIKSGASDTLAEDCAQDVMTTVWQKAHMFDPS 79

Query: 107 KAEAATWVFTIARNLRIDALRRERHPEVSDDELLEHEDDRPPADELLDGDRRARRLRGAL 166
           +A  ATW+FTIARN RID LR+ER PE   +EL    +  P   ++L   + + +L+ AL
Sbjct: 80  RASVATWIFTIARNRRIDMLRKERRPE--PEELPWGPEPEPDQADVLMLQQESEKLQAAL 137

Query: 167 AALTPEQAEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKAL 216
             L  +Q  +V   +F D++H  IA +  +PLGT+KSRLRLA+ K+R  L
Sbjct: 138 IQLPEKQRILVERCYFGDMSHSEIATQTGLPLGTIKSRLRLALDKLRHEL 187