Pairwise Alignments

Query, 221 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 55  GDRQAFARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYDPAKAEAATWV 114
           GD  AF  L+A +  R+  + +K     + AED+ QD    VW+  +  +P  A  ++++
Sbjct: 20  GDEDAFCELYAAYKNRLLYFAMKFVKSREFAEDIFQDAFTVVWQSRRFINP-DASFSSYL 78

Query: 115 FTIARNLRIDALRRERHPEVSDDELLEHE-DDRPPADELLDGDRRARRLRGALAALTPEQ 173
           +TI RN  ++ +R   + +   + +L H  D     +  +  D     L  AL  LTP Q
Sbjct: 79  YTIVRNRILNQIRDMANEDKLKEHILSHAVDSANETNNKILFDDLKDVLSRALEQLTPRQ 138

Query: 174 AEVVRLSFFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKAL 216
            EV  +S    ++H  IAE L V + TV+  + +++  IR  L
Sbjct: 139 REVFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSLKVIRAYL 181