Pairwise Alignments

Query, 692 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  458 bits (1179), Expect = e-133
 Identities = 263/681 (38%), Positives = 387/681 (56%), Gaps = 14/681 (2%)

Query: 7   RSLTLKQAIHAVLAAFVIGLTITAAEFAWTATRERATALAQVKDVVALVEGPAASAAWLI 66
           +SLT KQ    V  A    + I   E A      +       ++++  VE PAA+A W +
Sbjct: 6   KSLTWKQTNLVVFTALFFAIAIFIVEIALVVVSTKQQLTTTQQELLDSVEQPAANAVWAL 65

Query: 67  DAELAGLVLQGMVRAS-AAWAEIRLGDGTLLARRERPPKPASLLERGVTALLFVDRPVVT 125
           D  LA   L+G ++      A I L DG++           S     ++  LF D   ++
Sbjct: 66  DDNLARQTLEGAIKVEHVGSAVIELDDGSMFVSVSNNRANNSQTFISLSNQLFDDLKEIS 125

Query: 126 HELMTPTNGLASGPRAADGSRIGQLIVGIDTGRAASGFLTYVSAALVAGTLRNLLIGLAM 185
             L  P     +  +      IG L +  DT    +   + +  +  A   R LL+ L +
Sbjct: 126 RPLYRPFYFEGTQKQQL----IGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLTLVL 181

Query: 186 AAVFHRLLTRPLLQIGRAVARIDPEKPYGQPLAVPRGHADDELGFVISRFNHTLTLLEHE 245
             VFHR LT+P+ +I  A+ +I+P+ P    L +   H DDELG V S+FN  L      
Sbjct: 182 TVVFHRFLTQPIARISEAIDKIEPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQT 241

Query: 246 HDELRRLATRCPLTGLANRALLLDRLDHAIELANRARAPDAGRLAVLYVDLDRFKRVNDS 305
             +LR++ATR PLTGL NR LLL+ +   I+   R+R       A++++DLDRFK +NDS
Sbjct: 242 QSKLRKMATRDPLTGLPNRTLLLETIAVTIQ---RSRVHKRS-FALMFIDLDRFKNINDS 297

Query: 306 LGHGIGDLLLCRVAERLGASVRRCDTVGRLGGDEFLVVLERVADRDEAAMVAQRLLDGLS 365
           LGH +GD  L R+A  L   V    +V RLGGDEF+++ + V   D+AA    +LL  L+
Sbjct: 298 LGHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLN 357

Query: 366 SLRDVGEHRVHLTASIGVAVHPATGNGDAPDATGLMRMADSAMQAAKAAGGDRFVFYTRE 425
               + EH +H  ASIG++++P  G+     A  L+R AD AM +AKAAG +++ F+ ++
Sbjct: 358 VPIQLNEHAIHPAASIGISIYPEDGSS----AEDLIRHADIAMYSAKAAGSNQWAFFKQQ 413

Query: 426 MTDRAETRLRLESGLREAVASRAFELVYQPKIEAASGRLTGFEALIRWRHEGAAVSPADF 485
           MT+RA  RLR E+ L +A+ +  F L +QPK++  +G++TG EALIRW+ +G  +SP  F
Sbjct: 414 MTERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQKDGRLISPMSF 473

Query: 486 IPVAEDTGLIIEIGRWVLEEACRTATRWALDHG-PVPVAVNVSARQLADPGFARLVEQVL 544
           IPVAE+TG+II IGRWV+E++CR    W   +   +P+A+NV+++Q AD      ++Q+ 
Sbjct: 474 IPVAEETGIIIPIGRWVIEQSCRVLREWQKKYNYAIPIAINVASQQFADASLVSDIKQMA 533

Query: 545 QRHGTPPNLLELEITETVIMKDVRHHLPTLNRLRALGVRIAIDDFGTGYSSLAYLRQLPV 604
            R+   P LLE+EITET +M D+   +  L +L++ G  IA+DDFGTGYSSL+YLR LP+
Sbjct: 534 LRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPI 593

Query: 605 DVLKIDRSFVNDLPHAPDIASTVIALAQRLLLSTVAEGVETAEQRHWLAEAGCDCLQGFL 664
             +KIDR FV+DLP    IAST++ L ++L L+ VAEG+E   Q  WL    C   QGF 
Sbjct: 594 TTMKIDRCFVSDLPGDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQGFY 653

Query: 665 ISRPLAAEAAEAMVMTAFART 685
            S+PL     EA+ M +   T
Sbjct: 654 FSQPLPQADFEALYMASQTAT 674