Pairwise Alignments

Query, 293 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella sp. ANA-3

 Score =  200 bits (509), Expect = 3e-56
 Identities = 114/282 (40%), Positives = 163/282 (57%), Gaps = 14/282 (4%)

Query: 4   AIALRSPDSGESLSRYINDTHRYPVLTAEDEYMLAKAWTEHGDVDAAHRLVTSHLRLVVK 63
           ++AL  P    SL  YI+      +L AE EY LAK   E GD+ AA +L+ SHLR VV 
Sbjct: 7   SMALTVPQGSSSLEAYIHSVTSMTMLDAETEYELAKRLQETGDLQAAKQLIMSHLRFVVH 66

Query: 64  IAGGYRGYGLPLSDLIAEGNLGLMTAVKKFEPERGFRLSTYAMWWIKASIQDYILRSWSL 123
           +A GY GYGLP +DLI EGN+GLM AVK+F+P+ G RL ++A+ WIKA I +Y+L++W +
Sbjct: 67  VAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYVLKNWRI 126

Query: 124 VKIGTTAAQKKLFFSLGRLKRKLGEYGSGDLHPDSVTSIATDLSVPEDDVVAMNRRMSGP 183
           VK+ TT AQ+KLFF++ + K +LG +       D V  +A +L V + DV  M  RM   
Sbjct: 127 VKVATTKAQRKLFFNIRKAKTRLGWFSD-----DEVAMVAENLGVSKADVTEMESRM--- 178

Query: 184 VASLNAPMSADGDSGEWQDL-----LADERPSVEESLVERGEARQRSALLHEAMAVLNDR 238
            A+ +       D+ + QD      L D    + E++            L  A+  L++R
Sbjct: 179 -AAQDPAFDLSSDNDDEQDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDER 237

Query: 239 ERDILTSRRLSDSPLTLEDLSVRYGVSRERIRQIEEKAFEKV 280
            + IL +R L D   TL++L+  Y VS ERIRQ+E+ A  K+
Sbjct: 238 SQHILRARWLDDDKTTLQELAETYQVSAERIRQLEKNAMNKL 279