Pairwise Alignments
Query, 1274 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2
Subject, 646 a.a., PAS from Pseudomonas syringae pv. syringae B728a
Score = 290 bits (741), Expect = 4e-82
Identities = 204/565 (36%), Positives = 290/565 (51%), Gaps = 39/565 (6%)
Query: 734 YLVKPFSARELLARVEGALRLAELRRETAEQLRQANEALERRVEERTRERDRFWRLSRDP 793
+ ++P S R++ + R+ +L+Q NE LE R+ E ER+ +
Sbjct: 87 FRIEPASRRQVAVLFQDITE----RKRAELELKQLNETLEARIVEAVAERNVLADVVNGT 142
Query: 794 ---FLVADREGRWLSASPA----WTEILGWTEAEMLGRTSEWMEHPDD-CDKTRREVRKL 845
V D RW++ + A + + G + P D RR R L
Sbjct: 143 NAIIHVVDCNFRWMAINGAALREFERLFGIRPQVGDSMLDLLDDRPQSKADLERRWTRAL 202
Query: 846 AGG----GSTFRFEN----RFRTRGGHYRDFAWTATPADELMFCVARDVTEEKERAATLR 897
AG +F N F R R+ A A + A DV+E L
Sbjct: 203 AGEEFAESVSFSDSNDPASHFEIRYSTLRNAQGQAIGA----YLFAYDVSERLREQERLS 258
Query: 898 KTEEQLRQSQKMEAVGQLTGGMAHDFNNLLQAMSSCLQLVSRRV--GHAPEVEPILDAGR 955
+ EE LRQSQKMEAVGQLTGG+AHDFNNLL ++ L+L+ RV G E++ L A +
Sbjct: 259 QAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQ 318
Query: 956 QAVDRGASLIRQLMAFSRRQSLQPEAFDVRDRLLGLRLFLDRALRADIGLEFALQGGLWP 1015
A R ASL +L+AFSRRQ+L P+ D+ ++G+ + R + I LE GLW
Sbjct: 319 DASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWS 378
Query: 1016 VMADPVQFDLAVLNLATNARDAIDADGAVVVGADNVVLD-----GMDGLSGEFLKVFVRD 1070
D Q + A+LNL NARDA+ G + + N +D G D + G++L + V D
Sbjct: 379 TFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQGRDLIPGQYLSLCVSD 438
Query: 1071 SGRGIAPDALGRVFEPFFTTKAVGKGTGLGLAQVYGFCRQSGGTATVESVEGKGTVVSLL 1130
+G G++P+ + RVF+PFFTTK +G+GTGLGL+ VYGF RQSGG + S G+GT + L
Sbjct: 439 TGTGMSPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNMCLY 498
Query: 1131 LPR--AEATVASETPNAPPVLPSAADIHVLLVEDDPVVAPVVTAALEDLGYRVTRAATGE 1188
LPR A E +A P+ + V++V+D+P + +V LED GY A G
Sbjct: 499 LPRHYLGAPEEIEAADACGSAPAQTERTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGA 558
Query: 1189 EALRRLE-EAAVDLLFSDVVMPGSINGVALAQEARQRWPDLGILLTTGYSEDLA-----A 1242
AL+ LE +A +DLL +DV +PG +NG LA AR PDL +L TGY+E+
Sbjct: 559 SALKVLESDARIDLLVTDVGLPGGMNGRQLADAARIIRPDLKVLFITGYAENAIIGNGHL 618
Query: 1243 TKSVRVLSKPYRIEDLAHAIQEELE 1267
+ VL+KP+ +E A I E +E
Sbjct: 619 DPGMWVLTKPFTMEAFASRIYEMIE 643
Score = 58.5 bits (140), Expect = 2e-12
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 58/243 (23%)
Query: 463 WIDRDLWEKIVLNLISNAFKYTLSGG---VAVAVQPVGERAV------------LTVRDT 507
+ID E +LNL NA GG + A + + ER L V DT
Sbjct: 380 FIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQGRDLIPGQYLSLCVSDT 439
Query: 508 GVGIPAEEQPRVFDRFHRIEGQSGRTHEGTGIGLALVKDLTQLHGGTVALDSDVGRGSTF 567
G G+ E RVFD F + +GTG+GL++V + GG V + S+ G+G+
Sbjct: 440 GTGMSPEVINRVFDPFFTTKPLG----QGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNM 495
Query: 568 TVTLPFGNAHVPATERPAGPIPASTATRADAFVAEALHWLPQEQGEQSAPALVDGASSGP 627
+ LP H+L AP ++ A +
Sbjct: 496 CLYLP-------------------------------RHYL-------GAPEEIEAADACG 517
Query: 628 APERMRNATILLADDNADMRSYVERLLTAAGYRVETVGDGVAAVETAKA-APPDLVLSDV 686
+ T+++ DD +R V +L GY G+G +A++ ++ A DL+++DV
Sbjct: 518 SAPAQTERTVMIVDDEPTIRMLVAEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDV 577
Query: 687 MMP 689
+P
Sbjct: 578 GLP 580
Score = 27.3 bits (59), Expect = 0.004
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 804 LSASPAW------TEILGWTEAEMLGRTSE-WMEHPDDCDKTRREVRKLAGGGSTFRFEN 856
+ A+PA+ + ++G EM+ ++ W+E D +T G RFE
Sbjct: 24 VEANPAYEYHAGISNVVGKKLREMVREEADGWVEFYGDVLRT----------GKPIRFER 73
Query: 857 RFRTRGGHYRDFAWTATPADELMFCVA-RDVTEEKERAATLRKTEEQLRQSQKMEAVGQ 914
G + A+ PA V +D+TE K L++ E L +++ +EAV +
Sbjct: 74 ELVATGRYLALTAFRIEPASRRQVAVLFQDITERKRAELELKQLNETL-EARIVEAVAE 131