Pairwise Alignments

Query, 1274 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 648 a.a., response regulator from Pseudomonas sp. BP01

 Score =  307 bits (787), Expect = 2e-87
 Identities = 230/662 (34%), Positives = 330/662 (49%), Gaps = 56/662 (8%)

Query: 637  ILLADDNADMRSYVERLLTAAGYRVETVGDGVAAVETAKAAPPDLVLSDVMMPHLDGFGV 696
            +L+ DDNA  R  + R L   GY V   G G   +        D ++ DV +P + GF +
Sbjct: 7    LLIVDDNAATRYALRRRLALHGYTVMEAGTGGEGLALIGREQFDALILDVNLPDMSGFDI 66

Query: 697  IAALRGHPHTRDLPIILLSARAGEESSI-EGLQAGADDYLVKPFSARELLARVEGALRLA 755
            +  LR  P T  LP+I +SA + +   I  GL AGAD YLV P  A  L+A +   LR+ 
Sbjct: 67   VRLLRARPETALLPVIHVSAASIQTGDIITGLDAGADAYLVHPVDADVLVATLGTLLRV- 125

Query: 756  ELRRETAEQLRQANEALERRVEERTRERDRFWRLSRDPFLVADREGRWLSASPAWTEILG 815
               R+T   LR++  +           R+ F  +S  P  V D   +    + A+ +++ 
Sbjct: 126  ---RDTERALRESEASF----------REIFTNVSA-PIAVVDAGLKVHECNHAFEQLI- 170

Query: 816  WTEAEMLGRTSEWMEH--PDDCDKTRREVRKLAGGGSTFRFENRFRTRGGHYRDFAWTAT 873
                    R  + ++    DD      ++R+    G  +R        GG  RD  W  +
Sbjct: 171  -----QDNRNPDALQECFADDQQTAIADLRQHLLAGQRWRGTLGMHV-GGMPRDTEWQLS 224

Query: 874  PADELMFCVA--RDVTEEKER------------------AATLRKTEEQLRQSQKMEAVG 913
            P  E   C+    DVTE + R                   A   +TE QL Q QKM+A+G
Sbjct: 225  PYREPGLCLVFVEDVTEHRHRERSHLARLEDANTQLARETAQREQTEAQLLQLQKMDALG 284

Query: 914  QLTGGMAHDFNNLLQAMSSCLQLVSRRVGH--APEVEPILDAGRQAVDRGASLIRQLMAF 971
             LTGG+AHDFNNLL  + + L+L+ +RV      +V    DA   +    ASL  +L+AF
Sbjct: 285  SLTGGIAHDFNNLLTGIITSLELIRKRVAENRIEKVPAYADAALSSAMSAASLTHRLLAF 344

Query: 972  SRRQSLQPEAFDVRDRLLGLRLFLDRALRADIGLEFALQGGLWPVMADPVQFDLAVLNLA 1031
            +R+Q L     D+ +R+  L   ++R +   I L+  L       + DP+Q + AVLNL 
Sbjct: 345  ARQQPLDTRPVDINERVRSLEELINRTIGERIVLQLELSHEPTTALVDPIQLESAVLNLV 404

Query: 1032 TNARDAIDADGAVVVGADNVVLDGMDGL-SGEFLKVFVRDSGRGIAPDALGRVFEPFFTT 1090
             NARDA+   G + V        G   L  G ++ V VRD G GIAP+ L +VF+PFFTT
Sbjct: 405  INARDALAKGGHIWVNTAAAFSLGDPNLRDGPYVAVTVRDDGCGIAPELLEKVFDPFFTT 464

Query: 1091 KAVGKGTGLGLAQVYGFCRQSGGTATVESVEGKGTVVSLLLPRAEATVASETPNAPPVLP 1150
            K VG+GTGLGL+ +YGF RQSGG  ++ S  G GT V+L+LP +    + E P +P V  
Sbjct: 465  KPVGQGTGLGLSTIYGFARQSGGHVSIHSAPGLGTEVTLMLPASNQQESCEAP-SPQVDQ 523

Query: 1151 SAADIHVLLVEDDPVVAPVVTAALEDLGYRVTRAATGEEALRRL-EEAAVDLLFSDVVMP 1209
              A  +VL+VED   V   V   L D GYR   A T E+AL  L E+A + LL +DV +P
Sbjct: 524  QGAGEYVLVVEDMASVRLSVAEVLADAGYRCVLAETIEQALGHLREDAGIQLLLTDVGLP 583

Query: 1210 GSINGVALAQEARQRWPDLGILLTTGYSEDLAATKS-----VRVLSKPYRIEDLAHAIQE 1264
            G I+G  LA  AR   P L +L  TGY+E     ++     + +L KP++I +L   ++ 
Sbjct: 584  G-ISGRELADMARTYRPGLPVLFMTGYAETALDRQAFLGSGMDLLIKPFQISELLVKVRR 642

Query: 1265 EL 1266
             L
Sbjct: 643  AL 644



 Score = 75.5 bits (184), Expect = 1e-17
 Identities = 108/441 (24%), Positives = 173/441 (39%), Gaps = 76/441 (17%)

Query: 329 EAYEEERRRAEMLA--ELDRAKTAFFSNASHEFRTPLTLMLGPVEDMLQRSPAEDRAA-V 385
           E  + E+  A++L   ++D A  +     +H+F   LT ++  +E ++++  AE+R   V
Sbjct: 263 ETAQREQTEAQLLQLQKMD-ALGSLTGGIAHDFNNLLTGIITSLE-LIRKRVAENRIEKV 320

Query: 386 PVERDALELVHRNGQRLLRLVNALLDVSRIEAGRMKARFEPVDLAAFTAELASSFRSAMD 445
           P   DA      +      L + LL  +R    +      PVD+      L       + 
Sbjct: 321 PAYADA---ALSSAMSAASLTHRLLAFAR----QQPLDTRPVDINERVRSLEELINRTIG 373

Query: 446 RAGLDYRIDCPPLPEPVWIDRDLWEKIVLNLISNAFKYTLSGG-----VAVAVQ------ 494
              +  +++    P    +D    E  VLNL+ NA      GG      A A        
Sbjct: 374 ER-IVLQLELSHEPTTALVDPIQLESAVLNLVINARDALAKGGHIWVNTAAAFSLGDPNL 432

Query: 495 PVGERAVLTVRDTGVGIPAEEQPRVFDRFHRIEGQSGRTHEGTGIGLALVKDLTQLHGGT 554
             G    +TVRD G GI  E   +VFD F   +       +GTG+GL+ +    +  GG 
Sbjct: 433 RDGPYVAVTVRDDGCGIAPELLEKVFDPFFTTKPVG----QGTGLGLSTIYGFARQSGGH 488

Query: 555 VALDSDVGRGSTFTVTLPFGNAHVPATERPAGPIPASTATRADAFVAEALHWLPQEQGEQ 614
           V++ S  G G+  T+ LP  N                                 QE  E 
Sbjct: 489 VSIHSAPGLGTEVTLMLPASN--------------------------------QQESCEA 516

Query: 615 SAPALVDGASSGPAPERMRNATILLADDNADMRSYVERLLTAAGYR---VETVGDGVAAV 671
            +P  VD   +G          +L+ +D A +R  V  +L  AGYR    ET+   +  +
Sbjct: 517 PSPQ-VDQQGAG--------EYVLVVEDMASVRLSVAEVLADAGYRCVLAETIEQALGHL 567

Query: 672 ETAKAAPPDLVLSDVMMPHLDGFGVIAALRGHPHTRDLPIILLSARAGEESSIEGLQAGA 731
              + A   L+L+DV +P + G  +    R   +   LP++ ++  A      +      
Sbjct: 568 R--EDAGIQLLLTDVGLPGISGRELADMAR--TYRPGLPVLFMTGYAETALDRQAFLGSG 623

Query: 732 DDYLVKPFSARELLARVEGAL 752
            D L+KPF   ELL +V  AL
Sbjct: 624 MDLLIKPFQISELLVKVRRAL 644



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 1153 ADIHVLLVEDDPVVAPVVTAALEDLGYRVTRAATGEEALRRLEEAAVDLLFSDVVMPGSI 1212
            ADI +L+V+D+      +   L   GY V  A TG E L  +     D L  DV +P  +
Sbjct: 3    ADIRLLIVDDNAATRYALRRRLALHGYTVMEAGTGGEGLALIGREQFDALILDVNLP-DM 61

Query: 1213 NGVALAQEARQRWPDLGIL 1231
            +G  + +  R R P+  +L
Sbjct: 62   SGFDIVRLLRAR-PETALL 79