Pairwise Alignments

Query, 408 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  157 bits (397), Expect = 5e-43
 Identities = 111/357 (31%), Positives = 178/357 (49%), Gaps = 6/357 (1%)

Query: 22  LRRRRPGLLVLVTLLPLGLMGLLMAIFSAGLATRLPVAVLDFDGSDLSRTIVRTVDATPD 81
           L R    L   +T +P+ L   +  IFS G+A  LP  V+DF  S LSR ++R VDAT  
Sbjct: 16  LLRHDKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATST 75

Query: 82  AAVARRVADLAEGRRLILSGAVHGLLMIPRDLERDVKAARRPEVVFFYNAQTLSTGNLVL 141
             V++  A + E  + + S  ++G ++IP   ++ +    +P+V  FYN+Q +  G LV 
Sbjct: 76  LLVSQHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVN 135

Query: 142 RGISNAVPTVAAGIRLSLRTA-QGQPMDAAQASLAPIPVQVHGLFNPTMNYAHFLLAALL 200
             +  A  T  A + +    A +     AA     P+  Q+  LFN   NYA FL++A++
Sbjct: 136 SAVVQAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIV 195

Query: 201 PSLLQVVVVVASAYSVGLDVETRHRLAILRRLGGGLWPALAGKVLPYTILSVMVLGLADS 260
           P+L Q+ +VV++   + L    RH   +   L       L   +LPY  +  M+ GL   
Sbjct: 196 PALWQITIVVSTI--LILAANYRH-YGLKSWLAQSPLTQLTRTLLPYLPI-FMLQGLGFL 251

Query: 261 VLF-GLLDLPLRGQRGILLLAGILFLLACQLLGILLALLLRSTAMAVSIGTLLTAPAFGF 319
           + F  +L  P+ G    LLLA  + ++AC ++G     L    A A+S     TAP+F F
Sbjct: 252 IWFYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAF 311

Query: 320 MGIGFPRLGMGGFAQGYGALLPGTWYLTARIDQTVRGTPSDLSWPPVLVLAAFVIGL 376
           MGI FP   M   AQ +  LLP + Y+  +++Q   G  +  S  P++ +  +++ L
Sbjct: 312 MGITFPASDMNTLAQAWRNLLPISHYIEVQVNQVSYGLEALSSLQPMVNMWGYLLPL 368