Pairwise Alignments

Query, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1167 a.a., Transcription-repair coupling factor from Acidovorax sp. GW101-3H11

 Score =  500 bits (1288), Expect = e-145
 Identities = 372/1160 (32%), Positives = 561/1160 (48%), Gaps = 59/1160 (5%)

Query: 6    PVAEPAPDAPFPVPASSPTSLSVGSEGELAVRLAALARRPGGALLLARSDAR-ATRLARL 64
            P   P      P P  S  SL       L  RLA   +  G    +  +DA  A RL   
Sbjct: 13   PKLSPGKRFTLPRPEGSADSL-------LLARLAERDKAAGRTTAIVTADATDAQRLIEE 65

Query: 65   VGDLFPDLDTILLPIDETAAGDRAAPSRAVLGRRAAGLMRLAERGEPASGRLVVASADLA 124
            +    P L   L P  ET   D  +P + ++  R A L R++++ +     +V+  A  A
Sbjct: 66   MSFFAPGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQKDKDTGADVVLVPATTA 125

Query: 125  LQRVPPPQAWAGGHFRLTRGMAYDEAAWRGWFARTGYVMDDRVDEPGEVAIRGAVVEVFP 184
            L R+ PP   AG  F        DEA ++      GY    +V  PGE A+RG ++++FP
Sbjct: 126  LYRLAPPSFLAGYTFHFKIKQKLDEAKFKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFP 185

Query: 185  GHCDRPVRCDIADGVVRDLRLYDPVSQRSVESIDELALGPVTDLIVGPEMLDRLAASLAR 244
                 P R D+ D  +  +R +DP SQRS+  + E+ L P  +  +  +   +  +    
Sbjct: 186  MGSLVPFRVDLFDNEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRSRWRE 245

Query: 245  L--GSALPEGLRRELEEGRRPYAFDLQLPNVFDDCPLLLDLLP-EALVVLDAGARDRIEA 301
            +  G      + +++  G      +  LP  FD+   + D L  EA VVL        + 
Sbjct: 246  MLEGDPTKSRIYKDMGAGVATAGIEYYLPLFFDETATVFDYLGGEATVVLHGDLEPAFQR 305

Query: 302  RADDLAEAGIDRRIRRDDPCLLPVPPLERRLIDADALDEKLAARTLLPV-----EVTNGP 356
               D  +     R+ + DP    +PP E   + AD    +      L +     +V + P
Sbjct: 306  FWQDTKDRF---RLVQGDPERPALPP-EALFLSADQFYTRSKEHAQLSIRPGVEDVDDNP 361

Query: 357  V------VEAVR-TERTLLRRSVGLVGEGRAVLLAARSGAGEADRLAERMSSALGRPVPR 409
                   +  VR  E  L R    +      VLL A S  G  + L + + ++   P P 
Sbjct: 362  HFHKLGDLSVVRGAEDPLARLHAHIRNTQHRVLLLAESD-GRRESLLDFLRASGVNP-PA 419

Query: 410  LDRWPEPPLAAGDCAVLALRSAG---GFTC--DGMT------VLVAPRHAEERGGEAQVR 458
             D   E      D   + + +AG   GF+   DG+       +  A      R  + QV 
Sbjct: 420  FDSLAE--FEGADDEKVGIATAGLTVGFSWIEDGIDFVTETELFAAGPTTRRRKKQEQVS 477

Query: 459  PPLAP----SELSTGDFVVHLDYGIGRLIGLETIASG----DGEDDTADFLVLDYAHDDR 510
               A     +EL+ GD VVH  +GIGR  GL  +  G    DG     +FL L+YA    
Sbjct: 478  DVEALIKDLAELNVGDPVVHSAHGIGRYRGLVNMDVGNKNPDGTPAMQEFLHLEYADKAV 537

Query: 511  LLVPTADFDRLWRH-GSADTGAKLDSLKNAHWLERRAVLEAEIGETAKGILREARRRARE 569
            L VP +    + R+ G +   A L  L +  W + +     ++ ++A  +L    RRA  
Sbjct: 538  LYVPVSQLQLISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRALR 597

Query: 570  SAPVIDPPVDRMRRFGARFGFDPTEGQRRAIQTVLDAMRQGQPMDHLVCADVGYGKTEVA 629
                          F   FGFD T  Q  AI  V+  M   +PMD LVC DVG+GKTEVA
Sbjct: 598  QGHAFRYSPQDYETFANDFGFDETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVA 657

Query: 630  LRAAAAVAFAGHQVAVMAPTSVLARQHLEVFRRRFAGFGIRLEPLTGAMTKTESDRVRAG 689
            LRAA      G QVA +APT++LA QH +    RF+ + +++  ++   +  E      G
Sbjct: 658  LRAAFVAVTGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEITSAIKG 717

Query: 690  LADGSVDIVIGTHALLSKDVRFQRLGLMVVDEEQRFGATQKQALKRRIKGVHSLALSATP 749
            + DG+VDIV+GTH LLS+  +F  LGL+++DEE RFG   K+ +K     V  L L+ATP
Sbjct: 718  IGDGTVDIVVGTHKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATP 777

Query: 750  IPRTLQGALAGLRGLSIIDTPPARRRPVRTAVTPRDPTTARAALLRELGRGGQVFCVTPR 809
            IPRTL  AL GLR LS+I T P RR  ++T V        R A+LREL RGGQV+ +   
Sbjct: 778  IPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNE 837

Query: 810  IADLGELEEWIRGLVPSACIAVAHGRLGAAALDDAVMGFVDGESDILLATPIIESGIDIP 869
            +  +    + +  ++P A IAVAHG++    L+  +  FV    +ILL + IIE+GID+P
Sbjct: 838  VETIENRRQKLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVP 897

Query: 870  RANTLLLFRPDLFGLGQLHQLRGRVGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIES 929
             ANT+++ R D FGL QLHQLRGRVGR   Q YAYL+      L ++AA+RL +++ +E 
Sbjct: 898  TANTIIMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEE 957

Query: 930  LGGGFVLSMLDLDQRGAGDLLGEDQSGHLRAVGTELYQRILADALRALR--RQPDARWDP 987
            LG GF L+M DL+ RGAG++LGE+QSG++  VG +LY  +L +A+++L+  ++PD     
Sbjct: 958  LGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLNEAVKSLKAGKEPDLLSPL 1017

Query: 988  EVTVAV----PHGIPSAYIPEEELRIGLHRRIARTREAGELDALREEMEDRFGPLPVPME 1043
             VT  +    P  +P  Y  +  LR+  ++++A  +   ++D L EE+ DRFG LP   +
Sbjct: 1018 SVTTDINLHAPALLPDDYCGDVHLRLSFYKKLATAKTPDQIDGLLEEIVDRFGKLPPQAQ 1077

Query: 1044 RLLAIAGLRCRCRALGIASLGCGPAGVAVTLRGERA--SARAATLAKRSKGVLRAQDDRL 1101
             L+ +  LR   +  G+  +   P  + +T + +      R   L +++K +  A +++L
Sbjct: 1078 TLIDVHRLRVLSQPYGVVKVDAAPGVINITFKPQPPIDPMRIIELIQKNKHIKLAGNEKL 1137

Query: 1102 SAALEAPDAESRLANASRVL 1121
                E  D + R      VL
Sbjct: 1138 RIERELKDPKDRAQMVRDVL 1157