Pairwise Alignments

Query, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans MT42

 Score =  550 bits (1417), Expect = e-160
 Identities = 418/1143 (36%), Positives = 587/1143 (51%), Gaps = 84/1143 (7%)

Query: 35   AVRLAALARRPGGALLL-ARSDARATRLARLVGDLFPDLDTILLPIDETAAGDRAAPSRA 93
            A+ LA  AR  GG L++ AR   RA  L   +      L  +  P  ET   D  +P   
Sbjct: 29   ALLLAEAARAHGGLLVVVARDTQRAQALEAELKIFAGGLPVLHFPDWETLPYDVFSPHPE 88

Query: 94   VLGRRAAGLMRLAERGEPASGRLVVASADLALQRVPPPQAWAGGHFRLTRGMAYDEAAWR 153
            ++ +R A L RL        G LVV  A L +QR+ P     G    L +G   D A  +
Sbjct: 89   IVSQRVATLYRLPG---VKRGVLVVPVATL-MQRIAPHSHITGSGLVLAKGQKLDLAGEQ 144

Query: 154  GWFARTGYVMDDRVDEPGEVAIRGAVVEVFPGHCDRPVRCDIADGVVRDLRLYDPVSQRS 213
                 +GY    +V EPG+ A+RGA++++FP     P R ++ D  V  +R +DP +QRS
Sbjct: 145  RRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELFDDEVESIRSFDPETQRS 204

Query: 214  VESIDELALGPVTDLIVGPEMLDRLAASLARLGSALPEGLRR-----ELEEGRRPYAFDL 268
             + +D + L P  +  +  E       +L       P  +RR     +++EG  P   + 
Sbjct: 205  QQPVDRVELLPAREFPLTEEAAKEFRGNLRE---RFPIDVRRCPLYQDMKEGVTPGGIEY 261

Query: 269  QLPNVFDDCPLLLDLLPE-ALVVLDAGARDRIEARADDLAEAGIDRRIRRDDPCLLPVPP 327
             LP  F     L D L + AL VL  GA +     AD       +R  +R      PV P
Sbjct: 262  YLPLFFAQTATLFDYLADDALFVLGEGAGEA----ADQFWAQTAERYDQRAHDIERPVLP 317

Query: 328  LERRLIDADALDEKLAARTLLPVEVTNGPVVEAVRT------ERTLLRRSVG-------- 373
                 +  + L E+L  R  L VEV       AV T      E  L R+           
Sbjct: 318  PAELYLPPEQLRERLNKR--LRVEVVEPGHEHAVDTGTQPAPELPLNRKGEEPGTSLRHF 375

Query: 374  LVGEGRAVLLAARSGAGEADRLAERMSSALGRPVPRLDRWPEPPLAAGDCAVLALRSAG- 432
            L      VL+AA S AG  + L E ++ A  +P   +D W      A D    A+  A  
Sbjct: 376  LASYPGRVLIAADS-AGRREALVETLAGAGMKP-DNVDGWTS--FLAEDAQRFAITIASL 431

Query: 433  --GF--TCDGMTVLV----------APRHAEERGGEAQVRPPLAP----SELSTGDFVVH 474
              GF  T   +TVL           + R  + R G A  R P A     +EL+ G  +VH
Sbjct: 432  EQGFALTKPAITVLTERELYGERVRSERERKRRRGTA--RDPEAIIRDLTELTPGAPIVH 489

Query: 475  LDYGIGRLIGLETIASG--DGEDDTADFLVLDYAHDDRLLVPTADFDRLWRH-GSADTGA 531
            +D+G+GR  GL ++  G  DGE     FL ++YA  D+L VP A    + R+ G+A   A
Sbjct: 490  VDHGVGRYQGLVSMDVGGMDGE-----FLTIEYARGDKLYVPVAQLGLVSRYSGTAPELA 544

Query: 532  KLDSLKNAHWLERRAVLEAEIGETAKGILR-EARRRARESAPVIDPPVDR--MRRFGARF 588
             L SL    W   R     ++ + A  +L   A+R+AR    +   P+DR  +  FG+ F
Sbjct: 545  PLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESL---PIDRQLVEEFGSSF 601

Query: 589  GFDPTEGQRRAIQTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAP 648
             F+ T  Q  AI+ VLD +   + MD ++C DVG+GKTEVALRAA A A AG QVAV+ P
Sbjct: 602  PFEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVP 661

Query: 649  TSVLARQHLEVFRRRFAGFGIRLEPLTGAMTKTESDRVRAGLADGSVDIVIGTHALLSKD 708
            T++LA+QH   F  RFA + +R++ L+   +  E +     LADG +D+++GTH LL  D
Sbjct: 662  TTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLQPD 721

Query: 709  VRFQRLGLMVVDEEQRFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAGLRGLSIID 768
            V+F+ LGL++VDEEQRFG  QK+ LK+    V  L ++ATPIPRTL  A+AGLR LS+I 
Sbjct: 722  VKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIA 781

Query: 769  TPPARRRPVRTAVTPRDPTTARAALLRELGRGGQVFCVTPRIADLGELEEWIRGLVPSAC 828
            TPPA R  VRT ++  DP T R AL REL RGGQV+ +   +  +      +  LVP A 
Sbjct: 782  TPPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVPDAR 841

Query: 829  IAVAHGRLGAAALDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFGLGQLH 888
            I +AHG++    L+  +  F     ++L+ T IIE+GIDIP ANT+++ R D FGL QLH
Sbjct: 842  IRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLH 901

Query: 889  QLRGRVGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGD 948
            QLRGRVGR   + YAYL+      +   A +RL +L  +E LG GF L+  DL+ RGAG+
Sbjct: 902  QLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGE 961

Query: 949  LLGEDQSGHLRAVGTELYQRILADALRALR--RQPD----ARWDPEVTVAVPHGIPSAYI 1002
            LLG++QSG ++ +G  LY  +L  A+RAL+  + PD    +  + EV + +P  IP  Y+
Sbjct: 962  LLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYL 1021

Query: 1003 PEEELRIGLHRRIARTREAGELDALREEMEDRFGPLPVPMERLLAIAGLRCRCRALGIAS 1062
            P+   R+ L++RIA  R   EL  L+ EM DRFG LP P  +L A+A L+     LGI  
Sbjct: 1022 PDVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLGIRK 1081

Query: 1063 LGCGPAGVAVTLRGERASARAAT---LAKRSKGVLRAQ-DDRLSAALEAPDAESRLANAS 1118
            L  G  G  +  R E+      T   L +R   V +    D+L   LE P A  R+ +A 
Sbjct: 1082 LDFGANGGRIVFR-EKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERIRSAQ 1140

Query: 1119 RVL 1121
             +L
Sbjct: 1141 ELL 1143