Pairwise Alignments

Query, 731 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 903 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  277 bits (709), Expect = 1e-78
 Identities = 216/666 (32%), Positives = 325/666 (48%), Gaps = 65/666 (9%)

Query: 33  AVVETSGAGLVVADATRPDHPIVYCNRAFLDMIGYEAGEVIGRNGDFLQGPDTDPDTAAA 92
           A++E +   ++  D T     I   N A   M+GY+A ++IGR    L     D D  AA
Sbjct: 254 AILERAAYAVIATDVTGT---ITLFNPAAERMLGYKAEDLIGRASAMLFH---DSDELAA 307

Query: 93  IRAAMAAARPLSVEVLNYRKDGSAFWNALTLRPVPEAGGVSDGRARWIAGSCADVTQSRR 152
              AM             RK+G +  + L +     A    D        +  +   +R 
Sbjct: 308 RAEAM-------------RKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRL 354

Query: 153 SQEELRAAEDQLTRLAAETFALAEKLDGAREDAEAARIAAENASSAKSRFLAMMSHELRT 212
           +   LR        +      L E+L    ++ +AAR +AE AS+AK+ FLA MSHE+RT
Sbjct: 355 TLSRLRTKTGVNLGVLGIAVDLTEQLK-YEDELKAARASAEQASAAKADFLANMSHEIRT 413

Query: 213 PMTAVIGMGDLLM-GTGLNDQQKAFVKTLRSSAGTLMTILNDVLDFSKIEAGQLTLEEID 271
           P+  +IG  DL++    L    +  V  +  ++ +L  I++D+LDFSKIEA  LTLE   
Sbjct: 414 PLNGIIGYADLVLEDETLAPDTRRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKP 473

Query: 272 FSLPRLVDDVVQLFLVRAAAKGLSLSASIADDTPRHIRGDPTRLRQVLFNLVSNAIKFTD 331
             +  L+ +   +   +A  KGL L A+ A  TP  + GD  RLRQVL NL++NA+KFT 
Sbjct: 474 LYINELIANCASIIEPKADEKGLKLIAT-AQATPPVLIGDAGRLRQVLLNLMNNAVKFTT 532

Query: 332 RGTIEIAVWSPDPPADPPADPPAGAAPADAPVTLRFEVEDNGIGMTPEQRARLFDAFVQA 391
            G++E+ V              +     D  V LR  V D GIG++PE +  LF  F QA
Sbjct: 533 AGSVELIV--------------SCIGRVDHLVRLRISVADTGIGISPEAQKGLFKRFSQA 578

Query: 392 DVSTSRKYGGTGLGLAICKRLVEAMGGEITVASTPGRGSTFRFSILSRLAEAPPVGELGA 451
           D + SRK+GGTGLGLAI +R+V+AM GE+ + S PG GSTF F +   +AE   +  L A
Sbjct: 579 DETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAERLDIERLDA 638

Query: 452 RPALPGAAETPEPTQVPLRLLLAEDNDINRMLVVAMMSRIGHRIDAVTDGRAALDALVAA 511
           +     +          +++L+ +D ++NR L   M++R GH +D    G  A+  + + 
Sbjct: 639 QVHCSRS----------VKILVVDDVEMNRDLCKTMLTRAGHDVDLADSGATAIAMVASR 688

Query: 512 DYDALILDMEMPVLDGRSTARAIRRMDGPVARIPIVGLSADALPEHRDGHLAAGLDAYLT 571
            YD + +D++M  +DG    R IR +      +PI+ L+A+ LPE  + + AAG+D +L 
Sbjct: 689 TYDLVFMDVQMGEMDGLEATRRIRALGHAYRDVPIIALTANVLPEQVERYKAAGVDGHLG 748

Query: 572 KPIDWDQLNAVLVDLATRPQEGRVVPVPSRP--ATEGGHFSALPLVDRVKLAELRLALGG 629
           KPI+     A L+    R  +G +  VPS P    E G     P+ D+  L +LR+    
Sbjct: 749 KPIN----RAELLACVARWIDGDIAHVPSEPLAPVELGSEPEHPVRDQAALEDLRMFASE 804

Query: 630 EALDGMLQLLPETALRELTAIRS---------ALQAGRPKELKQAAHTLAGLAANFGTPR 680
             + G  + L +T    +T IR+          L       L  AAH    LA   G  +
Sbjct: 805 HDIAGFAEQLRDT----ITRIRAQWPHHIDAMKLDHEARTALGAAAHKTVSLAGQLGFKQ 860

Query: 681 MAAIAR 686
           +AA  R
Sbjct: 861 LAAACR 866



 Score = 39.7 bits (91), Expect = 7e-07
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 29  AMLAAVVETSGAGLVVADATRPDHPIVYCNRAFLDMIGYEAGEVIGRNGDFLQGPDTDPD 88
           A LAA+VE S   +V       D  ++  N+    + GY A + IG+N   L  PD   D
Sbjct: 105 AHLAAIVEGSSYAIVGQSI---DGTVLSWNKTAERLFGYTAEQAIGQNATELMVPDDLRD 161

Query: 89  TAAAIRAAMAAARPLS-VEVLNYRKDGSAFWNALTLRPVPEAGGVSDGRARWIAGSCADV 147
               + + ++     + +     R +G+    A+++ P+       DGR   +A S  D+
Sbjct: 162 EEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIR----ADDGRLIGMAASMRDI 217

Query: 148 TQSRRSQEELRAAEDQLTRLAAETFALAEK 177
           T   +++ E+      L R  AE     EK
Sbjct: 218 TDLVQAEREVHDLNAALERQVAERTCQLEK 247