Pairwise Alignments

Query, 731 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  278 bits (711), Expect = 8e-79
 Identities = 199/548 (36%), Positives = 289/548 (52%), Gaps = 50/548 (9%)

Query: 55  VYCNRAFLDMIGYEAGEVIGRNG-DFLQGPDTDPDTAAAIRAAMAAARPLSVEVLNYRKD 113
           + CN AF  M+G    E+IG +  DF+     D       R  + A  P S E    + D
Sbjct: 327 IACNPAFERMMGRPEQEIIGCSDYDFVSREQAD-FFRDKDRQVLVAGTPQSNEEWITQAD 385

Query: 114 GSAFWNALTLR-PVPEAGGVSDGRARWIAGSCADVTQSRRSQEELRAAEDQLTRLAAETF 172
           GS      T++ P+ E      G+   + G   D+T+ +R + E+      L  L AE  
Sbjct: 386 GSGQRLFETVKTPIVEP----QGKVLGVLGVARDITERKRLEAEVSNYSHHLEELVAER- 440

Query: 173 ALAEKLDGAREDAEAARIAAENASSAKSRFLAMMSHELRTPMTAVIGMGDLLMGTGLNDQ 232
              E+L  AR+ A AA +A       KS FLA MSHE+RTPM A+IG+  +L     + Q
Sbjct: 441 --TEELARARDAANAANVA-------KSAFLANMSHEIRTPMNAIIGLTHILKKGEPSPQ 491

Query: 233 QKAFVKTLRSSAGTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVDDVVQLFLVRAAAK 292
           Q+  +  +  +A  L++I+ND+LD SKIEA +L LEE    L R+V  +  +    A  K
Sbjct: 492 QQDRLDKIDDAASHLLSIINDILDLSKIEAERLVLEEQPVELGRIVSHIFSMLAEGARKK 551

Query: 293 GLSLSASIADDTPRHIRGDPTRLRQVLFNLVSNAIKFTDRGTIEIAVWSPDPPADPPADP 352
            + L + + D  P ++ GDPTRL Q + N  SNA+KFT+ G++ + +   +         
Sbjct: 552 DIVLKSEV-DPLPPYLLGDPTRLTQAILNYASNAVKFTEWGSVTLRIKVLE--------- 601

Query: 353 PAGAAPADAPVTLRFEVEDNGIGMTPEQRARLFDAFVQADVSTSRKYGGTGLGLAICKRL 412
                PAD  V LRFEVED GIG+ PE +  LF  F QAD STSR++GGTGLGL I +RL
Sbjct: 602 ---LTPAD--VFLRFEVEDTGIGIAPEVQPLLFAPFQQADGSTSRRFGGTGLGLVITRRL 656

Query: 413 VEAMGGEITVASTPGRGSTFRFSILSRLAEAPPVGELGARPALPGAAETPEPTQVPL--- 469
            + MGG+  V S  G GSTF FS   +L E        AR ALP     P+  +  L   
Sbjct: 657 AQIMGGDAGVDSRLGFGSTFWFSARLKLGE--------ARAALPEDGPRPDSAEGELLQH 708

Query: 470 ----RLLLAEDNDINRMLVVAMMSRIGHRIDAVTDGRAALDALV--AADYDALILDMEMP 523
                +LLAED+ IN+ +   ++   G R+D   DG  A+  L      Y  +++DM+MP
Sbjct: 709 YRGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYALVLMDMQMP 768

Query: 524 VLDGRSTARAIRRMDGPVARIPIVGLSADALPEHRDGHLAAGLDAYLTKPIDWDQLNAVL 583
            +DG    R IRR+ G +  +PI+ ++A+A  E R+  L AG++ ++ KP++ + L A+L
Sbjct: 769 GMDGLEATRHIRRLPG-MESLPIISMTANAFGEDRERCLEAGMNDFVPKPVNPEVLYAML 827

Query: 584 VDLATRPQ 591
           +    RPQ
Sbjct: 828 LKWLPRPQ 835