Pairwise Alignments

Query, 283 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 306 a.a., Lysine ABC transporter, permease component (from data) from Pseudomonas fluorescens FW300-N1B4

 Score =  116 bits (291), Expect = 5e-31
 Identities = 79/291 (27%), Positives = 153/291 (52%), Gaps = 28/291 (9%)

Query: 10  GEHAPILFPALMLVVFFVIPFGLMIAVSVARR---IPG-----GFYEPDLV----LANY- 56
           G    I  P + L +FF++PF +++ +S A     IP       F +  L     L+NY 
Sbjct: 17  GRQLVIGVPFIWLFMFFMLPFFIVLKISFAEADVAIPPYTEIYSFIDQKLQVLLNLSNYA 76

Query: 57  -----ERFLSAFFGGVLSFSLELAALVAVVAVGIGFPFTYRLARLPRAAQVRWLVFLLSI 111
                E +++A+ G     SL++A +  V+ + IG+P  Y +A   +  Q   LV L+ +
Sbjct: 77  MLGDDELYIAAYLG-----SLKMALISTVLCLLIGYPMAYAIASARKELQTV-LVLLIMM 130

Query: 112 LSLSEVIIG-FAWSTLLSRTAGITNLLVAVGLMAEPQSLSPSFGALLAGMVYQAFPYTVL 170
            + + ++I  +AW  +LS    +   L+++G + EP  +  +  A+  G+VY   P+ +L
Sbjct: 131 PTWTAILIRVYAWMGILSNNGLLNGFLMSMGWIDEPLQILNTNLAVYIGVVYSYLPFMIL 190

Query: 171 VLYPALARLDPALVEASRTLGASPLKAFFTVVVPAQRNTIVATLIMAFVFALGSYLLPQL 230
            LY  L + D +L+EA+  LG+S   +F+ + VP  +N I+A  ++ F+  +G +++P+L
Sbjct: 191 PLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPEL 250

Query: 231 LGRPQHWTLSVLITDQAIYQSNMPFAAAMAVFLVLVSLALVGLSLLFGRKE 281
           LG P+   +  ++  +     + P A+A+AV ++ + +  +   +LF R +
Sbjct: 251 LGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIVPI---ILFNRSQ 298