Pairwise Alignments

Query, 330 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli Nissle 1917

 Score =  110 bits (275), Expect = 4e-29
 Identities = 95/301 (31%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 19  MAATVALGGALGGVAFAADTVKLGVSIPAATHGFTGGIVWWANQAKAELEKAHPNLKITV 78
           + + VAL   +   A A DT+ L VS     + F    V   + A+ E +K   NL +  
Sbjct: 9   LVSAVALSATVSANAMAKDTIALVVS--TLNNPF---FVSLKDGAQKEADKLGYNLVVLD 63

Query: 79  KTASGAPEQANQLQDLVTVTKIDSLVIFPFESAALTQPVMQAKKKNVYVTVVDRGLTDPS 138
              + A E AN +QDL TV     L+I P +S A+   V  A + N+ V  +DR  T   
Sbjct: 64  SQNNPAKELAN-VQDL-TVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121

Query: 139 AQDAYIAGDNTAFGRIPAEYIAKKYNGKANIVALRGIP-TTLDNERWEAFTGVLKQYPDI 197
              ++IA DN   G+I  +YIAKK    A ++ L+GI  T+   ER E F   +  +   
Sbjct: 122 VV-SHIASDNVLGGKIAGDYIAKKVGEGAKVIELQGIAGTSAARERGEGFQQAVAAH-KF 179

Query: 198 KILDGKYANWNRDDAFKVTQDFLTRFKDIDVVWAADDDMAFGVLKAIEQAKRTDIKEVFG 257
            +L  + A+++R     V Q+ LT   D+  V+A +D+MA G L+A++ A ++D+  V G
Sbjct: 180 NVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVM-VVG 238

Query: 258 GAGSKTMVKTILDGSNPLIRADVSYSPKFIYDAIKMTAEARLKGDKLPATYIIPSALITK 317
             G+    K + DG    + A ++  P  I      TA+  LKG+K+ A Y +   L+ K
Sbjct: 239 FDGTPDGEKAVNDGK---LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295

Query: 318 E 318
           +
Sbjct: 296 Q 296