Pairwise Alignments

Query, 649 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 596 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  146 bits (368), Expect = 3e-39
 Identities = 85/286 (29%), Positives = 150/286 (52%)

Query: 362 ALAQGDVTRTVDGAHQGDFAAIKNNLNRAVEQLAAVLRAVNGSTEQVATSATETAAAAID 421
           A+A GD+T  V    + +   +   L R  E L+  ++AV   ++ ++T+  E A+  +D
Sbjct: 226 AIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLD 285

Query: 422 VSRQAAGQMMTLADVSGAIEQTAGAIGEIARNAERGSTLARGTADLAEDGQRTLISLTRA 481
           +S +   Q  +L + + ++E+    +   A NA + +TLA   + +A DG   +  + + 
Sbjct: 286 LSSRTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQT 345

Query: 482 VDGIAERTAGIERISALIAGIADKTYVLALNAGLEAVRAGESGRGFGLIAAKISSLAEDV 541
           ++ I   +A I  I ++I GIA +T +LALNA +EA RAGE GRGF ++A ++ +LA+  
Sbjct: 346 MEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRS 405

Query: 542 TAATRDIGTLVREASAGVETGVQAAGEAAEAIGRIVEASRDSGSTAQSIAAAIDEQNAMA 601
           ++A ++I  L+  +   V+ G +  G+A + +  ++ A +        I+AA +EQ+A  
Sbjct: 406 SSAAKEIKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGI 465

Query: 602 SLLKDRVEQLSMTGQATAGAAEEISATMASLTDMAQRLKAETARIR 647
             +   V Q+    Q  A   E+ SA   SL   AQ L  E A  R
Sbjct: 466 DQVSHAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFR 511



 Score = 55.8 bits (133), Expect = 5e-12
 Identities = 110/525 (20%), Positives = 195/525 (37%), Gaps = 70/525 (13%)

Query: 3   KNLKIGKKLAVLVVVLNAFTAIIGLIALHGMKMGNDALDTVYNDRVVPLRDLKVIADLYA 62
           KNL I  +LA+ ++VL A    IG   L GM         +  +R+       V AD   
Sbjct: 4   KNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERL----PKTVAADNTL 59

Query: 63  VNIVDMAHKARNGNMPTEAALA----AIDA-ARTGIREKWRGYLATYLVDEEKALVAKAE 117
           + I           +  + A A     +DA AR    + W  Y A    +E + LV K  
Sbjct: 60  IWIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVLVKKVS 119

Query: 118 PLMADADRAADRLRGILAAGRSERLDRFVIDELYPAIEPVSDAM----SALIELQLTVAK 173
             +   ++   R   ++ AG     DR  I +    +  +  AM     AL + +   A 
Sbjct: 120 DGIDKTEQELTRFAEVIKAG-----DRQAIADQARKVGTIYTAMQLDGQALSKYETEQAA 174

Query: 174 SVYQQNDALYDLTVRRTIGLLIGAVLVGVALGVAIIRSITVPLGQARDVIDRMARGDLNV 233
                + A Y+ +   +I  ++  +L+      ++ R+I  P+ +A    D +A GDL  
Sbjct: 175 QSAGASMARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTE 234

Query: 234 TVADDGRRDEIGHMLRATAGIAATLKAVAGDLRDLIEAARGGALSVRVEPERHAGEFAVL 293
            V     R+E+G +L         LK +   L   ++A R G+ ++         E A  
Sbjct: 235 AVHVHS-RNEMGQLLEG-------LKRMQESLSRTVQAVRSGSDAISTATR----EIASG 282

Query: 294 VRGANELVEVLTTPLFEVASVMARLSSGDIRGRMTGSYEGDLRALKGNVNRSIDALALLL 353
               +   E     L E AS M  L+S                 +K N + +  A  L +
Sbjct: 283 NLDLSSRTEQQAASLEETASSMEELTS----------------TVKHNADNARQATTLAV 326

Query: 354 DEISGFA-GALAQGDVTRTVDGAHQGDFAAIKNNLNRAVEQLAAVLRAVNGSTEQVATSA 412
           +  +  A G    G V +T++             +  +  ++  ++  ++G   Q    A
Sbjct: 327 NASTIAADGNAVVGRVVQTME------------EIRASSAKITDIVSIIDGIAFQTNILA 374

Query: 413 TETAAAAIDVSRQAAGQMMTLADVSGAIEQTAGAIGEIAR-------NAERGSTLARGTA 465
              A  A     Q  G  +   +V    ++++ A  EI           + GS L     
Sbjct: 375 LNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSVDRVQAGSELVGQAG 434

Query: 466 DLAEDGQRTLISLTRAVDGIA----ERTAGIERISALIAGIADKT 506
           D   D    +  +T  +  I+    E++AGI+++S  +  + + T
Sbjct: 435 DTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEAT 479



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 32/129 (24%)

Query: 84  AAIDAARTGIREKWRGY-----------------------LATYLVDEEKA---LVAKAE 117
           AA++AAR G  E+ RG+                       L  + VD  +A   LV +A 
Sbjct: 377 AAVEAARAG--EQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSVDRVQAGSELVGQAG 434

Query: 118 PLMADADRAADRLRGILAAGRSERLDRFV-IDELYPAIEPVSDAM---SALIELQLTVAK 173
             M+D   A  R+  I++   +   ++   ID++  A+  + +A    +AL+E     AK
Sbjct: 435 DTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQQNAALVEQASAAAK 494

Query: 174 SVYQQNDAL 182
           S+ QQ  AL
Sbjct: 495 SLEQQAQAL 503