Pairwise Alignments

Query, 283 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 307 a.a., choline ABC transporter substrate-binding protein from Pseudomonas sp. BP01

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 74/286 (25%), Positives = 118/286 (41%), Gaps = 15/286 (5%)

Query: 6   KTLCAVAMVGMSIMPAQAADK-----AIKMGTLGWEDLTPITGITKKVLEDAGFSVKVTE 60
           K   AV  + +    A AAD       +KM   GW D+     + + +LE  G+ VK+  
Sbjct: 3   KFSAAVFALALGAATAHAADSDAQCNTVKMADPGWSDIASTNAVARLLLESLGYKVKIDS 62

Query: 61  FSEWGIAYAALTKGDIEVLASQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGIAVPKYV 118
            +   I Y  L  G ++          Q + DK      ++++S    G    +AVP YV
Sbjct: 63  LAV-PIIYGGLKDGRVDAFLGNWMPAQQGFHDKFIANGDVQQLSRNLEGTEFTLAVPDYV 121

Query: 119 ---AVDSLDQLNANADKFGNKIIGIEPGSGLMRDASNAVKAYGLKL---QLVEGSTSAMT 172
               V     L  +AD+F  K+ GI  G+         +      L   +LVE S  AM 
Sbjct: 122 WNAGVKDFADLQKHADQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQAML 181

Query: 173 AALKSAFDRKEPIAVTIWEPSWMAQKFDMKYLADPKAVFPPPQGYYWIGRKGFSEQNPQA 232
           A +  A  +++ I    W P  M  K  M YL   +  F      Y + RKG+ +  P A
Sbjct: 182 AQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGSKGEVYTLTRKGYPQACPNA 241

Query: 233 REVMASVYVPLADITAINGAVKDGK-TMDQAVKEWTDSHGDLIKRW 277
            +++ ++   L    AI   V D K + D A + W  ++ +++  W
Sbjct: 242 AKLLDNLKFTLDMENAIMAEVVDKKISFDDAARAWVKTYPEVLDGW 287