Pairwise Alignments
Query, 1372 a.a., D-alanine--D-alanyl carrier protein ligase from Azospirillum sp. SherDot2
Subject, 4391 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2C3
Score = 335 bits (858), Expect = 8e-95
Identities = 229/584 (39%), Positives = 313/584 (53%), Gaps = 31/584 (5%)
Query: 54 QATAAAHPDRTAIVYEGRRVTYAELDARANRVAHGLRARGIGPGCFVGLWMARSLDLHVA 113
+A AA P A+V+ R+V+YA L+ +ANR+AH L G+ P V + + RS++L +
Sbjct: 1648 EAQAAYLPQAIAVVHGQRQVSYAALNEQANRLAHHLIGLGVQPDDCVAILLPRSIELLAS 1707
Query: 114 LLGILKAGAAYLPFDADAPAERVAVSLTDCAAPAILIDLVTGTKAATLAASGADVQVLRI 173
L ILK AAY+P D +A ER L DC A + L T+A A D+ L
Sbjct: 1708 QLAILKCAAAYVPLDRNASLERQGFMLDDCQAKCL---LTFSTEAVPAGARRIDLDTL-- 1762
Query: 174 GDVLSDSEEPFDLRADGVTPDSPAYAIYTSGSTGKPKGIVISHRNICHYLRAANSVYGIT 233
DS+ P A + +S AY +YTSGSTG+PKG+++ HR I + L N
Sbjct: 1763 -----DSQGPAHNPALAQSSESIAYIMYTSGSTGQPKGVLVPHRAI-NRLVINNGYADFN 1816
Query: 234 ADDVAFQGASVAFDLSLEEIFVPYLAGATLWVASRQVLDEADRLADVLTEAGVTVLDTVP 293
A D ++ AFD S +++ L G + V + L E R A VL ++GVTVL
Sbjct: 1817 AQDRIAFASNPAFDASTMDVWGALLNGGQVVVIDHETLLEPSRFAQVLQDSGVTVLFVTT 1876
Query: 294 TL----LAMLPKDIPSLRVVILGGEACPPAVASRW--CRPGRRLFNSYGPTEATVVATVA 347
+ + ++P+ + LR+++ GGE A R PG RL + YGPTE T AT
Sbjct: 1877 AIFNQYVQLIPQALGGLRILLCGGERADVASFRRLLDLAPGLRLVHCYGPTETTTYATTL 1936
Query: 348 EVHPDTP----VTIGRPIPNYTCYVVDEALQPVAPGTQGELLIGGPGVAQGYLGRPELTA 403
EV V IG PI N YV+D Q G GE+ IGG GVA+GYL RP+LTA
Sbjct: 1937 EVKAVAADAECVPIGGPIGNTQVYVLDARQQLAPLGVVGEMYIGGQGVAKGYLNRPDLTA 1996
Query: 404 EKFIANPFRSGTPGPHPDPLLYRSGDAVSVDADGNLRFHGRIDDQVKIRGFRLELGEIEA 463
EKFIA+PF PD LLYR+GD +G+L GR DDQVKIRGFR+ELGEIEA
Sbjct: 1997 EKFIADPF-----SHDPDALLYRTGDLGRWLPEGSLECLGRNDDQVKIRGFRIELGEIEA 2051
Query: 464 KLTDLAGIAQATVVLRTD-NGLDRLVAFLVAQPGASLDKTTLRDALRAQLPAYMVPAHYE 522
KL G+ A V++R D G RLVA+++AQP +L LR+ L A L YMVPA +
Sbjct: 2052 KLVACDGVKDAVVLVRADETGEKRLVAYVIAQPQVTLSVAGLREQLSATLSEYMVPAAFV 2111
Query: 523 QVAELPRLTSGKADRKTLQAMALTEDAGSGEQEEPRSPTEATLLEAARRVFPGQSIPLEA 582
++ P +GK DRK L A E S P+ TE L + + +
Sbjct: 2112 MLSAFPLTLNGKVDRKALPAPD-AEAYASQAYTAPQGETEQVLAGMWAELLKVERVGRHD 2170
Query: 583 DFFLDLGGHSLLAARFVSAVRETAGLASLTLQDVYGARTLRAMA 626
+FF +LGGHSLLA R + +R+ S+ ++ ++ TL+A+A
Sbjct: 2171 NFF-ELGGHSLLAMRLIERMRQVE--LSVDVRVLFSQPTLQALA 2211
Score = 323 bits (827), Expect = 3e-91
Identities = 244/646 (37%), Positives = 334/646 (51%), Gaps = 47/646 (7%)
Query: 45 RDELLSDIPQATAAAHPDRTAIVYEGRRVTYAELDARANRVAHGLRARGIGPGCFVGLWM 104
R++ + + +A A A PD A V G+ +TY ELD++A R+A L G+ G V + +
Sbjct: 563 REQPIHALFEAQAEARPDAPAAVQGGQVLTYRELDSQAGRLARHLLDLGLQAGQTVAILL 622
Query: 105 ARSLDLHVALLGILKAGAAYLPFDADAPAERVAVSLTDCAAPAILIDLVTGTKAATLAAS 164
RSLDL V+ L +LK A YLP D +AP ER + D A L + A
Sbjct: 623 PRSLDLLVSQLAVLKCAAVYLPLDINAPGERQQFMIEDSHAVLAL--------THSREAL 674
Query: 165 GADVQVLRIGDVLSDSEEP-FDLRADGVTPDSPAYAIYTSGSTGKPKGIVISHRNICHYL 223
ADV+ + + +V D EP + ++PAY +YTSGSTG PKG+++ HR I +
Sbjct: 675 AADVRRVDLDNV--DLPEPAAHYSQQPASSEAPAYIMYTSGSTGTPKGVLVPHRAISRLV 732
Query: 224 RAANSVYGITADDVAFQGASVAFDLSLEEIFVPYLAGATLWVASRQVLDEADRLADVLTE 283
D VAF ++ AFD S E++ P L G + V + VL +RL +L E
Sbjct: 733 INNGYADFNQQDRVAF-ASNPAFDASTLEVWAPLLNGGCVVVVDQDVLLSQERLHRLLLE 791
Query: 284 AGVTVLDTVPTLLAM----LPKDIPSLRVVILGGEACPPAVASRWCRPG--RRLFNSYGP 337
V VL L L LR +I+GG+ PAV +R + G L N YGP
Sbjct: 792 QAVNVLWMTAGLFHQYADRLMDVFAQLRYLIVGGDVLDPAVIARVLQDGAPAHLLNGYGP 851
Query: 338 TEATVVATVAEVHP--DTPVTIGRPIPNYTCYVVDEALQPVAPGTQGELLIGGPGVAQGY 395
TEAT +T E+ D V IGRP+ N Y++D +PV G GEL IGG GVA+GY
Sbjct: 852 TEATTFSTTYEIQAIGDGSVPIGRPLGNTRVYILDAQQRPVPQGVAGELYIGGLGVAKGY 911
Query: 396 LGRPELTAEKFIANPFRSGTPGPHPDPLLYRSGDAVSVDADGNLRFHGRIDDQVKIRGFR 455
L RP+LTAEKF+ +PF + L+YR+GD DGN+ + GR D QVKIRGFR
Sbjct: 912 LNRPDLTAEKFLLDPF-----SQNAQALMYRTGDLGRFREDGNIEYLGRNDGQVKIRGFR 966
Query: 456 LELGEIEAKLTDLAGIAQATVVLRTD-NGLDRLVA-FLVAQPGASLDKTTLRDALRAQLP 513
+E GEIEA+L A + +ATV++R D G RLVA F + S D LR L+++LP
Sbjct: 967 IEPGEIEARLGQHAAVKEATVLVREDVPGEKRLVAYFTLHSTDDSADIEALRAHLQSRLP 1026
Query: 514 AYMVPAHYEQVAELPRLTSGKADRKTL----QAMALTEDAGSGEQEEPRSPTEATLLEAA 569
YMVPA Y ++ LP +GK DRK L QA +T E P TE TL
Sbjct: 1027 DYMVPAAYVRLDALPLTPNGKLDRKALPVPDQASIVTRG-----YEAPLGDTEITLARLW 1081
Query: 570 RRVFPGQSIPLEADFFLDLGGHSLLAARFVSAVRETAGLASLTLQDVYGARTLRAMAERL 629
++V + + D F +LGGHSLLA + +R+ S ++ ++G TL A+A +
Sbjct: 1082 QQVLNVERVG-RHDHFFELGGHSLLAVNLIEQMRQVG--LSADVRVLFGQPTLAALAAAV 1138
Query: 630 ----EAKAPAAHGAKPADLSFDPPPLARRLLCGLAQAAALPIILAL 671
E + P A+G P P L L L Q A I+ A+
Sbjct: 1139 GGGNEVEVP-ANGITPDCERITPQMLP---LATLTQEAIDRIVAAV 1180
Score = 319 bits (817), Expect = 4e-90
Identities = 219/586 (37%), Positives = 308/586 (52%), Gaps = 27/586 (4%)
Query: 54 QATAAAHPDRTAIVYEGRRVTYAELDARANRVAHGLRARGIGPGCFVGLWMARSLDLHVA 113
+A AA PD A+V +++YA+L+ RAN++AH L GI P V + RSLD+
Sbjct: 2723 EARVAASPDAVAVVSGEAQLSYAQLNERANQIAHRLLELGIRPDDRVAICADRSLDMVAG 2782
Query: 114 LLGILKAGAAYLPFDADAPAERVAVSLTDCAAPAILIDLVTGTKAATLAASGADVQVLRI 173
LLGILKAGAAY+P D D P ER+A L + A +L +A + + L +
Sbjct: 2783 LLGILKAGAAYVPLDPDYPHERLAYMLENSAPMVVLTQ-----RALQASLPATQARTLLL 2837
Query: 174 GDVLSDSEEPFD-LRADGVTPDSPAYAIYTSGSTGKPKGIVISHRNICHYLRAANSVYGI 232
+ S +P D + +G+ AY IYTSGSTG PKG++ H + + L YG+
Sbjct: 2838 DEAQGFSTQPTDNPQVEGLHAHHLAYVIYTSGSTGLPKGVMNEHGGVVNRLLWMQDEYGL 2897
Query: 233 TADDVAFQGASVAFDLSLEEIFVPYLAGATLWVASRQVLDEADRLADVLTEAGVTVLDTV 292
TA D Q +FD+S+ E F P +GA L +A + L + + G+T L V
Sbjct: 2898 TATDAVLQKTPFSFDVSVWEFFWPLFSGARLVMARPGGHRDPAYLREAIQRHGITTLHFV 2957
Query: 293 PTLLAML-----PKDIPSLRVVILGGEACPPAVASRWCR--PGRRLFNSYGPTEATVVAT 345
P++L + L V+ GEA P + R+ P L+N YGPTEA V T
Sbjct: 2958 PSMLDVFLAHGEAGQCEGLVRVMCSGEALPGHLVRRFKAQLPHTGLYNLYGPTEAAVDVT 3017
Query: 346 VAE-VHPDTP--VTIGRPIPNYTCYVVDEALQPVAPGTQGELLIGGPGVAQGYLGRPELT 402
+ DTP IG+PI N Y++D QPV G GE+ IGG VA+GYL RPELT
Sbjct: 3018 AWDCAGTDTPDSTPIGKPIANTRIYLLDGHQQPVPMGVAGEIYIGGVQVARGYLNRPELT 3077
Query: 403 AEKFIANPFRSGTPGPHPDPLLYRSGDAVSVDADGNLRFHGRIDDQVKIRGFRLELGEIE 462
E+F+ +PF + +YR+GD DGN+ + GR DDQVKIRGFR+ELGEIE
Sbjct: 3078 VERFLRDPFSRAA-----NARMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIE 3132
Query: 463 AKLTDLAGIAQATVVLRTD-NGLDRLVAFLVAQPGASL-DKTTLRDALRAQLPAYMVPAH 520
A+L + + V+ R D G RLVA+ + D LR L QLP YMVP+
Sbjct: 3133 ARLAQHETVKEVVVLAREDAPGEKRLVAYFTPHSVDEMADIEALRTHLSGQLPEYMVPSA 3192
Query: 521 YEQVAELPRLTSGKADRKTLQAMALTEDAGSGEQEEPRSPTEATLLEAARRVFPGQSIPL 580
Y ++ LP +GK DRK L A L + + E E P+ EA + + + +
Sbjct: 3193 YVRLDTLPLTPNGKLDRKALPAPDL-DAVITREYEAPQGEVEARIARIWEDLLKLEQVGR 3251
Query: 581 EADFFLDLGGHSLLAARFVSAVRETAGLASLTLQDVYGARTLRAMA 626
+FF +LGGHSLLA + + +R+ S+ ++ ++G TL A+A
Sbjct: 3252 HDNFF-ELGGHSLLAVKMIERMRQVD--LSVDVRVLFGQPTLAALA 3294
Score = 300 bits (769), Expect = 2e-84
Identities = 224/629 (35%), Positives = 327/629 (51%), Gaps = 60/629 (9%)
Query: 30 PTVPTLSGRVDPSLLRDELL-------SDIPQ---------ATAAAHPDRTAIVYEGRRV 73
P +P + P+ R++LL +D PQ A PD A++ +R+
Sbjct: 3766 PDMPLQQLSILPASEREQLLVTFNATEADYPQQQTIHGLFEAQVQRTPDAVAVIRGEQRL 3825
Query: 74 TYAELDARANRVAHGLRARGIGPGCFVGLWMARSLDLHVALLGILKAGAAYLPFDADAPA 133
+Y EL+ RANR+AH LR +G+ P V + + R +D+ V LL ILKAG Y+P D P
Sbjct: 3826 SYGELNERANRLAHYLRKQGVKPDSRVAICVERGIDMVVGLLAILKAGGGYVPLDPAYPL 3885
Query: 134 ERVAVSLTDCAAPAILIDLVTGTKAATL-AASGADVQVLRIGDVLSDSEEPFDLRADGVT 192
+R+ L D +APA+++ + ATL + A + V+ + L E + +T
Sbjct: 3886 DRITYMLED-SAPAVVL-----AQTATLELLAAASMPVIDLDSGLWQDESVQNPEVAELT 3939
Query: 193 PDSPAYAIYTSGSTGKPKGIVISHRNICHYLRAANSVYGITADDVAFQGASVAFDLSLEE 252
AY IYTSGSTG PKG++I HRN ++L A+ + S+ FDL++ E
Sbjct: 3940 SSHLAYVIYTSGSTGLPKGVMIEHRNTVNFLTWAHRSFDDATLSKTLFSTSLNFDLAVYE 3999
Query: 253 IFVPYLAGATLWVASRQVLDEADRLADVLTEAGVTVLDTVPTLLAMLPKD---IPSLRVV 309
F P +G ++ V + VL+ E +T+++TVP+ L L + + V
Sbjct: 4000 CFAPLTSGGSIEVVT-NVLELQQ------GEHDITLINTVPSALKTLLESGGLGEGVDTV 4052
Query: 310 ILGGEACPPAVASRWCRPG--RRLFNSYGPTEATVVAT-VAEVHPD-TPVTIGRPIPNYT 365
+ GEA ++ +RL N YGP+E T ++ V+ D IG+P+ N
Sbjct: 4053 NVAGEALKRSLVETLFEQTQVKRLCNLYGPSETTTYSSWVSMAREDGFAAHIGKPVANTQ 4112
Query: 366 CYVVDEALQPVAPGTQGELLIGGPGVAQGYLGRPELTAEKFIANPFRSGTPGPHPDPLLY 425
Y++DE QPV G GE+ IGG GVA+GYL R +LTAE+F+ +PF + P+ +Y
Sbjct: 4113 FYLLDEHGQPVPLGVPGEIYIGGAGVARGYLNRDDLTAERFLKDPFSTA-----PNARMY 4167
Query: 426 RSGDAVSVDADGNLRFHGRIDDQVKIRGFRLELGEIEAKLTDLAGIAQATVVLRTD-NGL 484
R+GD DGN+ + GR DDQVKIRGFR+ELGEIEAKL I + V+ R D G
Sbjct: 4168 RTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGEIEAKLAQAPNIKETVVLAREDVPGD 4227
Query: 485 DRLVAFLVA-QPGASLDKTTLRDALRAQLPAYMVPAHYEQVAELPRLTSGKADRKTLQA- 542
RLVA+ P +++ TLR L+AQLPAYMVPA Y ++ LP +GK DRK L A
Sbjct: 4228 KRLVAYFTQHSPDEAVEIETLRMHLQAQLPAYMVPAAYVRLDALPLTPNGKLDRKALPAP 4287
Query: 543 -----MALTEDAGSGEQEEPRSPTEATLLEAARRVFPGQSIPLEADFFLDLGGHSLLAAR 597
+A G+ E + A LL+ R G+ D F +LGGHSLLA
Sbjct: 4288 DSNAYTTRLYEAPVGDMEIKLAALWAELLKVER---VGRH-----DHFFELGGHSLLAVT 4339
Query: 598 FVSAVRETAGLASLTLQDVYGARTLRAMA 626
+ +R+ A + + ++G TL +A
Sbjct: 4340 LIERMRKDDMEADIRV--LFGQPTLALVA 4366