Pairwise Alignments

Query, 1062 a.a., multidrug efflux RND transporter permease subunit OqxB28 from Azospirillum sp. SherDot2

Subject, 1063 a.a., Multidrug efflux transporter MexF from Pseudomonas fluorescens FW300-N2E2

 Score = 1302 bits (3369), Expect = 0.0
 Identities = 650/1039 (62%), Positives = 827/1039 (79%), Gaps = 1/1039 (0%)

Query: 1    MNISKFFIDRPIFAGVLSVALFLAGAIAVFRLPISEYPEVVPPSVVVRAQFPGANPKVIA 60
            M  S+FFI RPIFA VLS+ + +AGAI++F+LPISEYPEVVPP+VVV A +PGANPKVI 
Sbjct: 1    MKFSQFFITRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVHANYPGANPKVIG 60

Query: 61   ETVASPLEEQINGVEGMLYMQSQANSDGNLALTVTFKLGTDPDKAQQLVQNRVAQAMPRL 120
            ETVA+PLE+ I GVE MLYM SQ+ +DG L LTVTF LGTD D AQ  VQNRV +  P+L
Sbjct: 61   ETVAAPLEQAITGVENMLYMSSQSTADGRLTLTVTFALGTDLDNAQVQVQNRVTRTEPKL 120

Query: 121  PSDVQRLGVATVKSSPTLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLTRISGVGEVQVW 180
            P +V R+G+   K+SP LT++VHL+SP+ RYDM YL NYA+LNVKD L+R+ G+G+V+++
Sbjct: 121  PEEVTRIGITVDKASPELTLLVHLVSPDKRYDMLYLSNYAILNVKDELSRLDGIGDVKMF 180

Query: 181  GAGDYAMRVWLDPGKVAQRGLTATDVVNSIREQNVQVAAGVIGASPSLPDVPMQLSINAR 240
            G GDY++R+WLDP K A R LTATDVVN++REQN QVAAG +G+ P+      Q+SIN++
Sbjct: 181  GIGDYSLRIWLDPNKTASRNLTATDVVNAVREQNRQVAAGQLGSPPAPNATSFQMSINSQ 240

Query: 241  GRLKTADEFGDIVLKTGGEGGVTRLRDVARVELAAAQYGLRSLLDNKPAVALGITQTPDA 300
            GRL + +EF ++++++G +G +TRL+D+ RVEL + QY LR+LL+N+ AVA+ I Q P +
Sbjct: 241  GRLVSEEEFENVIIRSGPDGEITRLKDIGRVELGSNQYALRALLNNEEAVAMPIFQRPGS 300

Query: 301  NALAISDEVRKVMAELKGDMPDGVDYSIVYDPTQFVRSSIEAVVHTLLEAVALVVLVVIV 360
            NA+ IS++VR  MAELK   P+G+DY IVYDPT FVRSSIEAVVHTL EA+ LVVLVVI+
Sbjct: 301  NAIDISNQVRAKMAELKKSFPEGMDYEIVYDPTIFVRSSIEAVVHTLFEALILVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPL+AVP+S++GTF+++  FGFS+NALSLFG+VLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIASGLSARDATIRAMQEVSGPIIAIALTLVAVFVPLAAMTGLTGEFYKQFAMTIAIST 480
            RNI SGL   +AT +AM EV+GPIIA AL L AVFVP A ++GLTG+FYKQFA+TIAIST
Sbjct: 421  RNIESGLEPVEATKKAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 481  VISAFNSLTLSPALAAVLLRGHDEPQDWLTRAMNRVFGGF-FRLFNRVFHRASEGYGRGV 539
            VISAFNSLTLSPALAAVLL+ H  P+D  ++ ++R+ GG+ F+ FNR F +AS GY   V
Sbjct: 481  VISAFNSLTLSPALAAVLLKAHGAPKDRFSKVLDRLLGGWLFKPFNRFFDKASHGYVIAV 540

Query: 540  GGVVRRKGVMLAVYALLIGATVLLGRSVPSGFVPMQDKEYLISFAQLPNGASLDRTEAVI 599
              V+R   V L VYA LI  T +   + P+GFVP QDK+YL++FAQLP+ ASLDRTE+VI
Sbjct: 541  AKVIRGSSVALLVYAGLIAMTYVGFSTTPTGFVPTQDKKYLVTFAQLPDAASLDRTESVI 600

Query: 600  REMTDIALKRPGVQSAVAFPGLSVNGFTNSSSAGIVFVTLKPFAERKDPSLSAGAIAMDL 659
            R M+ IA+  PG  SAVAFPGLS+NGFTNSS+AGI F+ L+PF ERKDPSLSAGAI+  L
Sbjct: 601  RRMSTIAMNEPGFDSAVAFPGLSINGFTNSSNAGIAFIGLRPFDERKDPSLSAGAISASL 660

Query: 660  QQRYAGLKEAFVAIFPPPPVMGLGQLGGFKMQLEDRGNLGYEALSDAVNAFVKRAAQTPE 719
              ++ G+++A++A+FPPPPV GLG +GGF++Q+EDRGNLGYE L       + ++   PE
Sbjct: 661  NAKFGGIQDAYIAVFPPPPVQGLGTIGGFRLQIEDRGNLGYEELYKETMNIIGKSRSVPE 720

Query: 720  LGPTFSAYQINVPQLDVDLDRVKAKQLGVNVADVFDTMQIYLGSLYVNDFNAFGRVYQVR 779
            L   F++Y +NVPQ+D  +DR KAK  GV + D+FDT+Q+YLGSLY NDFN FGR YQV 
Sbjct: 721  LANLFTSYTVNVPQVDAAIDREKAKIHGVAINDIFDTLQVYLGSLYANDFNRFGRTYQVN 780

Query: 780  VQADAPFRDTADDIGVLKTRNAAGTMVPLSSLVTVQPGYGPEMVVRYNGFTAADVNGGPA 839
            VQA+  FR   + IG LK RN  G M+PL++ V V P  GP+ V+ YNGF  A++NGG A
Sbjct: 781  VQAEQQFRQEPEQIGQLKVRNNKGEMIPLATFVKVSPTSGPDRVMHYNGFITAEINGGAA 840

Query: 840  PGFSSGQAEAAAERIAAEVLPRGVKLEWTDLTYQKILVGNAGLWVFPISVLLVFLVLAAQ 899
            PG+SSGQA+AA E++  E LP G+  EWTDLTYQ+IL GN  L VFP+ VLL FLVLAA 
Sbjct: 841  PGYSSGQAQAAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAL 900

Query: 900  YESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSAKNAILIVEFARE 959
            YES +LPLA++LIVPM++LSA+ GV ++ GDNNIFTQIG +VLVGL+ KNAILIVEFA++
Sbjct: 901  YESWSLPLAVILIVPMTLLSAIAGVIISKGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960

Query: 960  LEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMRHAMGVAVFAGMI 1019
             + +G   ++A ++A R+RLRPILMTS AFIMGV+PLVTS+GAG+EMR AMGVAVF+GM+
Sbjct: 961  KQAQGMSPLEAVLDACRMRLRPILMTSFAFIMGVIPLVTSTGAGSEMRRAMGVAVFSGML 1020

Query: 1020 GVTLFGLVLTPVFYVLLRK 1038
            GVT FGL+LTPVF+VL+R+
Sbjct: 1021 GVTFFGLLLTPVFFVLIRR 1039



 Score = 47.0 bits (110), Expect = 7e-09
 Identities = 35/157 (22%), Positives = 67/157 (42%)

Query: 888  SVLLVFLVLAAQYESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSA 947
            +++LV LV+    ++    +  L+ VP+S++     + L G   N  +  G ++ +G+  
Sbjct: 350  ALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVV 409

Query: 948  KNAILIVEFARELEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMR 1007
             +AI++VE        G   V+A  +A      PI+ T++      VP    SG   +  
Sbjct: 410  DDAIVVVENVERNIESGLEPVEATKKAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFY 469

Query: 1008 HAMGVAVFAGMIGVTLFGLVLTPVFYVLLRKLAGAER 1044
                + +    +      L L+P    +L K  GA +
Sbjct: 470  KQFALTIAISTVISAFNSLTLSPALAAVLLKAHGAPK 506