Pairwise Alignments

Query, 387 a.a., Efflux pump periplasmic linker BepF from Azospirillum sp. SherDot2

Subject, 438 a.a., MexE family multidrug efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum GMI1000

 Score =  434 bits (1116), Expect = e-126
 Identities = 228/387 (58%), Positives = 282/387 (72%), Gaps = 1/387 (0%)

Query: 1   MSRKTLSLLIAAGVSVAALTGAATLRSPAEAQTASPAPPPAEVDVATVLARPVTDWQSYS 60
           +S++TL+L +AA V VAA+ G   L   A A     AP    VDVA  +AR VTDW  +S
Sbjct: 3   LSKRTLALSVAAVVGVAAV-GIYGLAPTAGASQQPAAPAAMPVDVAPAIARNVTDWDEFS 61

Query: 61  GRLEAVDRVDIRPQVPGSIVAVHFRNGALVKQGDVLFTIDPRPYEAEVARAEAQVAAAQA 120
           GRLEAV+RV++RP V G+I AVHF++G++V++GD LFTIDPRPY AEVAR +A + AA++
Sbjct: 62  GRLEAVERVEVRPLVGGTITAVHFKDGSIVRKGDPLFTIDPRPYAAEVARTQAALTAAKS 121

Query: 121 RVRFTVADLDRAQKLVRDDTISRSTMDQRDNAAREATANLKAAQAALDIARLNLGYTRVT 180
           RV +T ++L+RAQKLV D+ I+R   ++++NAAREA ANL+ A AALD A+LNL YTR+ 
Sbjct: 122 RVAYTASELERAQKLVADNAIARREFEEKENAAREAQANLQGAAAALDAAKLNLEYTRIV 181

Query: 181 APVSGRVSRAERTVGNVVAAGATAEPLTTLVSESPIYASFDVDEQTYLRHIAPMRDSGTI 240
           APV+GRVSRAE TVGNVVA G  A  LTTLVS SP+Y +FD DEQTYLR  A        
Sbjct: 182 APVAGRVSRAEITVGNVVATGGAAPVLTTLVSVSPMYVAFDADEQTYLRFSANTAQGART 241

Query: 241 PVRLGLANEEDYSRSGMVEHVDNRLDSVSGTIRVRARFDNGDGTLVPGLYARVKVGGTKP 300
           PV +GLANE+ Y+R G ++ VDNRLD  SGTIRVRA  DN DG L PGLYARVK+G   P
Sbjct: 242 PVYIGLANEDGYTREGTIQSVDNRLDVRSGTIRVRATVDNADGRLTPGLYARVKMGSGAP 301

Query: 301 YDALLVDDRAIGTDQDKKFVLVVTAENKVEYRPVKLGTLQNGLRVVTAGLSAGEQVVVNG 360
           +DA+L+ D+AIGTDQDKKFVLVV A NK  YRPV LG   +GLRVV AGL  GE++VVNG
Sbjct: 302 HDAVLISDKAIGTDQDKKFVLVVDAANKTSYRPVTLGASTDGLRVVKAGLKVGERIVVNG 361

Query: 361 MQHARPGMAVTPKTVAMGTEKTQTAAR 387
           +Q  RPG  V P  V M +   + AAR
Sbjct: 362 IQRVRPGDPVAPNAVTMESLVAKRAAR 388