Pairwise Alignments

Query, 319 a.a., Cytochrome c oxidase subunit 2 from Azospirillum sp. SherDot2

Subject, 345 a.a., Cytochrome c oxidase subunit II (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  109 bits (272), Expect = 1e-28
 Identities = 96/318 (30%), Positives = 134/318 (42%), Gaps = 33/318 (10%)

Query: 3   SLQLLPPSASAHAADMDWLFAALLGVSAFILLLVFGLMILFCVRYRKGSKVERGNRLGRT 62
           S   L PS    AA  D     ++G+ A  +++   + I +   + K          G  
Sbjct: 46  SQSALEPSGLGAAAAYDLTIGMVVGLGAVFVVV---MAIAWFAWHSK-------RPAGHW 95

Query: 63  WRVEVAWTG---LTFAAFLVLYFWGANLYVRIHSPPSDATDIYVVGKQWMWKIEH-PGGQ 118
           W     WTG       A   +        V    P  DA  I V G Q+ W + + P G 
Sbjct: 96  W----VWTGGVITPLIAISTVMVASTAALVATTRPAPDALVIEVTGYQFWWDVVYDPDGT 151

Query: 119 --REIDTLHVPVGRPVRLVLTSQDVIHDFAIPAFRIRQDAVPGRYETLWFTPTEVGEYRL 176
             R+ + L +P GRPV L L S DVIH F +P+   + D +PGR  TL  T TE G++R 
Sbjct: 152 PLRDANELILPEGRPVTLRLNSNDVIHSFWVPSISGKMDMIPGRTNTLTITATETGQFRG 211

Query: 177 FCAEFCGTWHARMGGTVVVMEPSDFQHWL-----DSQDPGPSLAQEGEALFRSYGCSGCH 231
            CAEFCG  H +M   V V+ P  F  WL      ++D       EG  +F S GC+ CH
Sbjct: 212 QCAEFCGLSHPKMAFEVTVLPPEAFDKWLATTRGAARDVARPAQAEGREVFLSAGCAACH 271

Query: 232 GGAGTVHAPKLEGLFGRPVPLEGGRTVIADD--RYLRDSILMPKAEIAAGYPPV-MPSFA 288
              G        G  G  +   G R  +     R  + ++    A++    P   MPS+ 
Sbjct: 272 EIRGVAEG----GRLGPDLTRLGARASLGAGMWRMNQGNVAGWIADVQDMKPGAQMPSY- 326

Query: 289 GQIGEDDLLKLVAYIKSL 306
             +   DL  L AY+ SL
Sbjct: 327 NHLSGPDLRNLSAYLVSL 344