Pairwise Alignments

Query, 765 a.a., putative TonB-dependent receptor BfrD from Azospirillum sp. SherDot2

Subject, 776 a.a., ligand-gated channel protein from Pseudomonas fluorescens FW300-N2E3

 Score =  323 bits (827), Expect = 3e-92
 Identities = 258/813 (31%), Positives = 371/813 (45%), Gaps = 97/813 (11%)

Query: 6   SPHGLRPLLAGAAATASLAMSFALPATADAQGTGTGSGNPGTGPTPQRSSGDALQLDSIK 65
           SP     LLA A   A  A S A  A A  +             T  ++  +A+ LD+  
Sbjct: 8   SPVSSPRLLASAIGVAITASSAAHMAYAAEK-------------TDDKAPRNAIALDATS 54

Query: 66  VDAAAPQTGNVNAAPTGVSRLPDTVKDTPRVVNVVPQEIIEQQRATSLEQTLRNVPGITI 125
           V   A  + +         +    + DTPR V V+PQ++++   A +++  LR VPGIT 
Sbjct: 55  VTGEAQDSTSYQVEKASSPKYTAPLIDTPRSVTVIPQQVLKDTGALNMQDALRTVPGITF 114

Query: 126 STGEGNGGQNGDQFRIRGLTARGDIYTDGLKDFGVYTHDVFNTETVQVFKGPSGNGFGVG 185
             GEG G   GD+  IRG  A+GD Y DG++D G  + ++F  E+++V KGP+    G G
Sbjct: 115 GAGEG-GNPQGDRPFIRGFDAQGDTYLDGVRDTGSQSREIFAVESIEVSKGPNSAIGGRG 173

Query: 186 NSGGVINQGTKKASLQQKAKVEQSVGSGPTYRTTVDVNQPLSDTAALRVNGLYHTQNVPG 245
            +GG IN  +KKA L        + GS  T R T+D N   SDTAA R+N L H  NV G
Sbjct: 174 AAGGSINLVSKKAHLGDSFNGGFTWGSDQTQRYTLDSNYQFSDTAAGRLNLLSHESNVAG 233

Query: 246 RDDVDADRRGIAADLGLGLGTPTTWHLNYAFLKGEKTPDMGQPMVQGRDG------IFRP 299
           RD VD DR GIA  L  GLGT T  +L+Y  L+    PD G P      G         P
Sbjct: 234 RDKVDYDRWGIAPSLAFGLGTDTRVNLDYYHLQSNDLPDSGIPYTVPASGKTADRTKSNP 293

Query: 300 AAEYGLNRSTSYVRTLDRDDTENHILTSSFA--HEVNKALSVYNDSRFSHYERNIAATTP 357
              Y    S+++    DRD  +    T++FA  H+++ AL++ N  R     ++   T P
Sbjct: 294 DKPYAGGDSSNFYGLTDRDFRKTRTDTATFAIEHDLSDALTIKNTLRHGTSMQDYILTQP 353

Query: 358 SPLSGAAATQFLAGRDVALSYGAGGGMAFKQQGFGVQNVTGAKVDGDLF------GLRHS 411
               G                    G  +++    V NV       DLF      G ++S
Sbjct: 354 DDSKG----------------NVNNGSVWRRANTRVSNVATTTNQTDLFGNFYIAGFKNS 397

Query: 412 LNGGLDVSYQRDKRETGTW-VNR--------------------------VNNQTVRNPTR 444
            + G  V + R++ E  ++ VN                            N  ++ NP  
Sbjct: 398 FSTG--VEFTREEGEKSSYNVNTDTTPGSGPADKPSSNCTPSMIGASSGYNCTSLANPNP 455

Query: 445 NYSANTAIIYPESGGREASVTNAGLFVTDRMWLFDTLSVQGGLRWDYFRT---SFGSASP 501
           N   N A I     G + +     L+V D + L     V  GLR+D+F T   +F +A  
Sbjct: 456 NDPWNGA-ISRNYAGTDTTANTRALYVFDTLELSPQWLVNMGLRYDHFDTKYKTFTAAGA 514

Query: 502 TIAGGQASDRTWSPSVSLIYEPTKESSVYASYSRSYKPIGTDIAAAV----TNGTAETPN 557
           T A G  +    +  + ++Y+P +  S+YASY+ S  P G  +   +     +GT +   
Sbjct: 515 TTAKGADTSEFVTGQLGVVYKPAENGSIYASYATSATPPGNTLGEGMDGNPLSGTKDRNG 574

Query: 558 GARSFD--PEQTDLYEIGGKADFLNGRLGVSGAIFQAEKTNT-YSVDPATGTVTDGFSEA 614
              S D  PE T  YE+G K D LN RL ++ A+F+ EK N    VD      T  ++ A
Sbjct: 575 NLLSSDMEPETTKNYEVGTKWDLLNDRLSLTAALFRTEKENARVQVD------TTSYANA 628

Query: 615 GLGVRVRGFEASISGKLTEGWSVYTNYAYL-TGKVTESRTNAALVGHAAPNVPKHNGSLW 673
           G   RV+G E S +GK+T+ W V+  YAY+ + +V     N A  G+  PN PK++ SLW
Sbjct: 629 G-KTRVQGIELSANGKITDKWQVFAGYAYMDSEQVDGGPLNHATDGNQLPNTPKNSASLW 687

Query: 674 TTYEFDAGSVGKFTVGGGVQVASEYWTDSANTGRLPYTFSADALVSYEF-RNVSVALNGY 732
           +TY        K T+GGG     + +   ANT  +      DA+ SY+  +NV + LN  
Sbjct: 688 STYNV----TPKLTLGGGAFYVDDVFGSVANTTMVNSYVRYDAMASYKLTKNVDLQLNLQ 743

Query: 733 NLTDHRNYTSAFNASRAVPASGRTVMLTTGLTF 765
           NLTD   Y  AF    A  A GRT +L+T   F
Sbjct: 744 NLTDVTYYDKAFATHFANQAPGRTALLSTNFHF 776