Pairwise Alignments

Query, 440 a.a., N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase from Azospirillum sp. SherDot2

Subject, 384 a.a., succinyl-diaminopimelate desuccinylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (249), Expect = 8e-26
 Identities = 114/416 (27%), Positives = 168/416 (40%), Gaps = 63/416 (15%)

Query: 24  DAADAAQGDCVSHLSD-LVRQPSLLGDESGAQALMADRFAALGLEVDRFDIDEQAISRMP 82
           DAA ++Q   V+ L+  L+ +PS+   + G Q LMA+R AA+G  ++    ++       
Sbjct: 3   DAAHSSQTGPVTELTKALIARPSVTPLDEGCQTLMAERLAAIGFNIEAMVFEDTT----- 57

Query: 83  GFSPPVLPGAYAGRENVVGVHRPREAKGRSLILNGHIDVVPTGPAELWTTPPFEPRIADG 142
                     +A R N           G      GH DVVPTG    W TPPFEP I DG
Sbjct: 58  --------NMWARRGNT----------GPVFCFAGHTDVVPTGDLSRWHTPPFEPTIIDG 99

Query: 143 RLYGRGAGDMKAGIAAYTAAFSALRNLGYQPAAPVYLQSVIEEECTG---NGALACLH-- 197
            LYGRGA DMK  +AA   A    R +   P  P  +  +I  +  G   NG    +   
Sbjct: 100 YLYGRGAADMKGSLAAMVVATE--RFVAKHPNHPGSIAFLITSDEEGPFINGTTRVIDTL 157

Query: 198 --RGYRADAAVIPEPFNHSISIAQV------GVMWVRLVLTGTPAHVLDTSAGVNAIEAA 249
             R  +   A++ EP + ++ +  V      G +   L + G   HV       N I  A
Sbjct: 158 EARNEKITWALVGEP-SSTLKLGDVVKNGRRGSLTANLTVKGVQGHVAYPHLADNPIHKA 216

Query: 250 YALAAHLKALEVRWNEPACRHPAFCGHAHPVNINLGRIEGGEWPSSVPTRCALDLRLGFF 309
               A L   +  W+      P       P ++ +  I GG   S+V    AL++   F 
Sbjct: 217 APFLAELS--QTHWDNGNAFFP-------PTSMQIANINGGTGASNV-IPGALEVMFNFR 266

Query: 310 PGQEPEAVRAEVTRAVEQARSTDPALSGVGIELQW--NGFQAAGCEIDPAHPLVTLLADS 367
              E   V AE+   +E+  +   A   +  +++W  NG      E     PL+     +
Sbjct: 267 YSTE---VTAEI--LIERVETLLTA-HELDYDIRWTFNGLPFLTGE----GPLLDATRHA 316

Query: 368 HRAVRGGDPELVALTCTTDARFFQLYGDTPATCYGPEATRIHGIDESVSLDSLRDV 423
            R V G D +      T+D RF    G       GP    IH ++E V +D L  +
Sbjct: 317 IRQVTGYDTDPQTTGGTSDGRFIAPTG-AKVLELGPVNATIHKVNECVKVDDLEQL 371