Pairwise Alignments

Query, 294 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  119 bits (297), Expect = 5e-31
 Identities = 94/280 (33%), Positives = 130/280 (46%), Gaps = 25/280 (8%)

Query: 20   RILVVEDSPLNQMLVTAILAQAGHRADTAGNGLEAVMAAQAG---GYDLILMDLSMPEMD 76
            RIL+ ED+ +NQ +   +L   G +   AG+GL+AV   +      +DL+LMDL MP +D
Sbjct: 969  RILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLD 1028

Query: 77   GLTATRLLRDLPGPAGRVPVVAMTADTDEADRVRCQHAGMNDHVAKPVDRAQLLETVEKW 136
            G  AT  LR     A  +P++AMTA     +R RC   GMNDH+AKP+D   L  T+ +W
Sbjct: 1029 GYDATERLRCQQRFA-HLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARW 1087

Query: 137  LRASEWRASASPDMSSGFGLCASAAPAAAGEVLDREVLAQLAQDLDAELLTDVLRQFVEE 196
                E R  AS    +       A P   G V   + LA++A   +  L   +L +FV+ 
Sbjct: 1088 Y---EERPGASAPAPTPAKDGTDALPPIPG-VNTTQGLARMAG--NQALYRRLLLRFVDT 1141

Query: 197  ---TRERVARIAGETDRTVLTREAHTLKSTAGTFGASTLCSAARALEMACRASLAEREEA 253
               T E + +   + D T     AHTLK  AG  GA  L   A AL+ A R +       
Sbjct: 1142 QTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQALRRN------- 1194

Query: 254  EKGDGDGVADGSADTVERLRGEIPRLAGDAIAAYRAAGYP 293
                 DG         +RL  E+  + G   AA    G P
Sbjct: 1195 -----DGQGQKLESLRQRLAEELAAVTGAIAAALAEEGGP 1229



 Score = 45.4 bits (106), Expect = 7e-09
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 7/188 (3%)

Query: 3   ERTPPSLLPTDGQPAPCRILVVEDSPLNQMLVTAILAQAGHRADTAGNGLEAV-----MA 57
           E   P  LP     A  R+LV +D+   + ++   L     R D   +G EA+     M 
Sbjct: 809 ELARPRTLPAS--LAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLTEMQ 866

Query: 58  AQAGGYDLILMDLSMPEMDGLTATRLLRDLPGPAGRVPVVAMTADTDEADRVRCQHAGMN 117
             A  Y ++ +D  MP++DG++    L+     A    VV +TA   E  R + ++ G+ 
Sbjct: 867 GGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRRQTENLGIC 926

Query: 118 DHVAKPVDRAQLLETVEKWLRASEWRASASPDMSSGFGLCASAAPAAAGEVLDREVLAQL 177
             + KPV  + L + +   + A    A+     +    +       A    +++++  +L
Sbjct: 927 GILVKPVSASTLFDVLVSLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIAVEL 986

Query: 178 AQDLDAEL 185
            Q + A++
Sbjct: 987 LQSMGAQV 994