Pairwise Alignments

Query, 396 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 310 a.a., site-specific integrase from Pseudomonas fluorescens SBW25-INTG

 Score =  120 bits (302), Expect = 4e-32
 Identities = 100/340 (29%), Positives = 157/340 (46%), Gaps = 51/340 (15%)

Query: 38  DRLIERSLADGTRAVYARAWARFAGWCQGQGMAALPATPATLAAFLAHHADPPPQAGSRT 97
           DR +  +  D TR  Y  A   F     G     LPAT  ++A +L  HA          
Sbjct: 5   DRYLNAATRDNTRRSYRAAIEHFEVSWGG----FLPATSDSVARYLVAHAGV-------- 52

Query: 98  TEGAPTGLSPSRLEVVRAAVRREHTRTGHPDPGADPRIGQLLRGVRRSWAERGQSRRQVE 157
                  L+ + L++  +A+ + HT  G PDP   P + ++L+G+R   A      +Q E
Sbjct: 53  -------LAVNTLKLRLSALAQWHTSQGFPDPTKAPVVRKVLKGIR---AVHPAQEKQAE 102

Query: 158 ALTASSHGDTDVPTLRLVVEAITPAE-----VRGVRDTALVLVGFAGALRRSELCSLTWG 212
            L    H +  V +L +   A T A+     +R  RDTAL+L+GF    R  ELC L   
Sbjct: 103 PLQLK-HLEQVVASLEVEATAATQAQDQPRLLRAKRDTALILLGFWRGFRSDELCRLDIE 161

Query: 213 DVRSAAG-GLTVTLRTSKTDRDAKGQSVGIPRVGGPLCPVAALTAWRKALLAAGHTVSTS 271
            V++  G G+++ L  SK+DRD  G++   P +   LCPV A + W  A      +    
Sbjct: 162 HVQATPGAGISLYLPRSKSDRDNLGKTYHTPAL-LRLCPVQAYSEWLSA------SALVR 214

Query: 272 DPVFRDVSRWGHVAAAALHPSTVARIVKRLV--AAVPTEGLDEELRRRLDPARYAGHSLR 329
            PVFR + RWG++    LHP++V  ++++ +  A +P E             +Y  HSLR
Sbjct: 215 GPVFRGIDRWGNLGEEGLHPNSVIPLLRQALERAGIPAE-------------QYTSHSLR 261

Query: 330 AGFVTTAAIEGKDIIDILMTTRHAEPRTVIDYVRTERLAG 369
            GF T A   G D+  ++     ++ ++ + YV +    G
Sbjct: 262 RGFATWAHRSGWDLKSLMSYVGWSDMKSAMRYVESTPFIG 301