Pairwise Alignments

Query, 522 a.a., RNA polymerase sigma-54 factor 2 from Azospirillum sp. SherDot2

Subject, 477 a.a., RNA polymerase, sigma 54 subunit, RpoN (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  261 bits (668), Expect = 3e-74
 Identities = 180/518 (34%), Positives = 276/518 (53%), Gaps = 63/518 (12%)

Query: 1   MTPQLQQAIKLLQLSNIELSDFVDREIEQNPLLERDGGSADGGSDPVGPADGSDAPGGLD 60
           MTPQLQQAI+LLQLS +EL + V +E+ +NP LE                          
Sbjct: 17  MTPQLQQAIRLLQLSRLELVETVQQEMLENPFLEE------------------------- 51

Query: 61  GPGGMAANGLSADGLNGRDDGPALPTGDGRTRDTVEMTSSDTMTSSSESPLDTDFENVYG 120
                            +D+GP + T D R       T++  +    E   D D+E+  G
Sbjct: 52  ----------------AQDEGPQVETPDPREA----ATAAADVAYDREIARDADWEDYLG 91

Query: 121 DDRFSDGSDGGSEVYGSYGERGGRSGFEDDDSNLEATLTSEKNLRDHLTEQLKIDLPDLG 180
           D   +       E           +   ++ ++ EA   ++ +L  HL  QL++      
Sbjct: 92  DFASTSRQSTVRE-----------TEMPEEMTSFEARYAAKPSLEGHLMWQLRLSSLTER 140

Query: 181 DQLIGLALIDMLDEAGWLIGFDAQAMAEQLGCGAERVERVLTACQRFDPPGIFARSLKEC 240
            + IG  +I  +  +G+L       +AE  G     VE VL A QRFDP G+ AR+ +EC
Sbjct: 141 QKDIGEVIIGNIASSGYLHA-TVDDIAEMAGVTPGEVESVLHAVQRFDPVGVSARTAQEC 199

Query: 241 LAIQLREKNRL-DPAMAALL-DNLELLAARNLPAIMKVCGVDAEDVADMVVDIRKLNPKP 298
           L +Q+       D  +  L+ D+LE L  R    +++   +  ED+ + +  I+ L+P P
Sbjct: 200 LLVQIEMLGYTRDKVLVELVRDHLEDLEKRRYKPLLRKFRLTMEDLKEYLDLIQTLDPMP 259

Query: 299 ALAFDHTPAQLVTPDILMRANPGGGWLIDLNPDTLPRVLVNHRYFARISDGARNKADKEY 358
             ++     Q V+PD+ +       ++I LN D LP + ++  Y  R +  A +  ++EY
Sbjct: 260 GASYGGGDPQFVSPDVYVYKYDDD-FIIMLNEDGLPHLQLSTMY-ERSAAAAASAGEREY 317

Query: 359 ISERFQSANWLVKSLHQRATTILKVASEIIRQQDAFFIHGVSHLRPLILRDIAEAIGMHE 418
             E+ +SA+WL+KSL+QR  T+ KV   I++ Q  FF  GVS L+PLIL+DIA+ IGMHE
Sbjct: 318 FQEKMRSASWLIKSLYQRQRTLYKVVESIVKYQRGFFEDGVSRLKPLILKDIADDIGMHE 377

Query: 419 STVSRVTTNKFMATPRGVFELKYFFTSAIQGADGQASHSAEAVRHRIKTMIDAEKPDDVL 478
           STVSR+TT+K++ATP G+ ELK+FF SA++  DG +   +E+V+  IK +I  E P + L
Sbjct: 378 STVSRITTSKYVATPHGIMELKFFFNSALELDDG-SQVGSESVKALIKKLIADEDPREPL 436

Query: 479 SDDKLVEILRAE-GIDIARRTVAKYREAMKIPSSVQRR 515
           SD+++ EIL+ +  ++IARRTVAKYR AM IPSS +R+
Sbjct: 437 SDERIGEILKDQLKVNIARRTVAKYRTAMDIPSSSKRK 474