Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

 Score =  150 bits (378), Expect = 1e-40
 Identities = 128/431 (29%), Positives = 207/431 (48%), Gaps = 22/431 (5%)

Query: 25  DVQEMEVSIADVGARGDGIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVL 84
           D +   V+I  +  +G G+AF     LFV   + G+ V ++  ++  K +  R +L++VL
Sbjct: 14  DTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTEN--KSKYARGQLIKVL 71

Query: 85  EPGTGRQTPPCRHFGRCGGCTLQQMD-----DPTYAAWTVGMVRGALERVGLGDVPMEPL 139
           +P   R  P C H+ +CGGC LQ +D          A +  MV+ A + + L      P+
Sbjct: 72  KPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALS----APV 127

Query: 140 ARTPAGARRRARFAAL--KRGKRVWFGFNERQSHRLVDLEECPVLSPRLFALVEPLRTLL 197
                G RRRAR + +  K+ +++  GF  +QS  +V++  CPVL P L AL+  L  LL
Sbjct: 128 CSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALL 187

Query: 198 NGLLPDGGDADVVLTDLEGGVDLLLVGPRSLDRAAREVLFGFEPERIARIAWQPTDRAAA 257
           +          V L   +    L+L    +L    ++ L  F  +    + +   +    
Sbjct: 188 SEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTL-YLMLEAGEL 246

Query: 258 EPVANRRPAFIRFAGVPIQPPPGAFLQAS-AEGEAALVAAVR-EGVGQAGRIADLFAGVG 315
           + V    P +    G  +   P  F+Q + A  +  +V A+    V    R+ DLF G+G
Sbjct: 247 QHVQGEAP-YCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLG 305

Query: 316 TFSIPLAQQA-AVHAVEGDEAAV--AALGRSVQGLRLTAERRDLFENPLSAKD--LNRYD 370
            F++PLA+QA AV  VEG +  V  A     +  +   A  +   E  +++      ++ 
Sbjct: 306 NFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFA 365

Query: 371 AVVFDPPRAGAVAQAAALAGSKVPRVVGVSCNPASFARDARVLVDGGYRLVKLWPVDQFL 430
            V+ DP RAGA      L+     RVV VSCNPA+ ARD++ L+  G+RL KL  +D F 
Sbjct: 366 KVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFP 425

Query: 431 WSAHVELVGLF 441
            ++H+E + LF
Sbjct: 426 HTSHLESMALF 436