Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 443 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  181 bits (459), Expect = 4e-50
 Identities = 141/435 (32%), Positives = 207/435 (47%), Gaps = 30/435 (6%)

Query: 27  QEMEVSIADVGARGDGIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVLEP 86
           Q++ + +  +   G GIA  +G  +F+P  + G+ V V+  +   K    RA+L  V E 
Sbjct: 17  QKIALKVQRLDHLGAGIAEHQGKVVFIPGALPGETVEVQLTEQ--KKNYARAKLQRVSEA 74

Query: 87  GTGRQTPPCRHFGRCGGCTLQQMDDPTYAAWTVGMVRGALERVGLGDVPMEPLARTPA-- 144
              RQTPPC  +G+CGGC LQ +  P    +         +R  LGD+     A+T    
Sbjct: 75  SPDRQTPPCPWYGKCGGCDLQHLSLPRQLEY---------KRQALGDIVSRSAAQTVTVN 125

Query: 145 ---------GARRRARFAAL--KRGKRVWFGFNERQSHRLVDLEECPVLSPRLFALVEPL 193
                      RRRAR A L  K   ++  GF E  S  +V ++ C VL+  L  L+ P 
Sbjct: 126 TDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSELISPF 185

Query: 194 RTLLNGLLPDGGDADVVLTDLEGGVDLLLVGPRSLDRAAREVLFGFEPERIARIAWQPTD 253
            TLLN L        + LT    G+  +L     L ++ +++L  F  ER   +  Q  +
Sbjct: 186 ATLLNRLKGKQRLGHLELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALLLQGNE 245

Query: 254 RAAAEPVANRRPAFIRFAGVPIQPPPGAFLQASAEGEAALVAAVRE--GVGQAGRIADLF 311
                  +     + +  G+ +   PG F+Q + E   A+VA       V    R+ DLF
Sbjct: 246 GELEFLSSGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLF 305

Query: 312 AGVGTFSIPLAQQAA-VHAVEG--DEAAVAALGRSVQGL-RLTAERRDLFENPLSAKDLN 367
            GVG FS+PLA+Q A V  VEG  +  A A    ++ GL  L+    DL E+  +   L 
Sbjct: 306 CGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSEDLAAEPWLG 365

Query: 368 RYDAVVFDPPRAGAVAQAAALAGSKVPRVVGVSCNPASFARDARVLVDGGYRLVKLWPVD 427
           + D ++ DP RAGA      L   K  +V+ VSCNPAS ARD+ +L + GY+L +L  VD
Sbjct: 366 KIDKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVD 425

Query: 428 QFLWSAHVELVGLFE 442
            F  + H E + LFE
Sbjct: 426 MFPQTHHSEGMALFE 440