Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  135 bits (341), Expect = 2e-36
 Identities = 128/418 (30%), Positives = 186/418 (44%), Gaps = 18/418 (4%)

Query: 42  GIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVLEPGTGRQTPPCRHFGRC 101
           G+   EG  +FV   + G+ V         K      E+  VL P   R  P C HFG C
Sbjct: 15  GVTRLEGKTVFVEGALPGETVEYALFRE--KPNYAVGEVSAVLRPSCARVPPRCPHFGTC 72

Query: 102 GGCTLQQMDDPTYAAWTVGMVRGALERVGL--GDVPMEPLARTPAGARRRARFAA-LKRG 158
           GGC++Q ++     A    ++   L  +     +    P+     G R RAR    +   
Sbjct: 73  GGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARLTVRMVES 132

Query: 159 KRVWFGFNERQSHRLVDLEECPVLSPRLFALVEPLRTLLNGLLPDGGDADVVLTDLEGGV 218
           K +  GF+E++S  + DL  CP+L   +  L+ PLR L   L        V +   E   
Sbjct: 133 KGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVEIAVGEKCT 192

Query: 219 DLLLVGPRSLDRAAREVLFGFEPERIARIAWQPTDRAAA---EPVANRRPAFIRFA-GVP 274
            ++L     L  A  ++L  F  E       QP   A+A    PV     +++    G+ 
Sbjct: 193 VMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHPVDGPDLSYLLPEFGLE 252

Query: 275 IQPPPGAFLQASAEGEAALVA-AVREGVGQAG-RIADLFAGVGTFSIPLAQQAA-VHAVE 331
           ++  P  F Q +      L+  A+R    Q G RIADLF G+G F++P+A+  A V  VE
Sbjct: 253 MRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGLGNFTLPIARSGARVVGVE 312

Query: 332 GDEAAVAALGRSVQGLRLTAERR----DLFE-NPLSAKDLNRYDAVVFDPPRAGAVAQAA 386
           G +        +     L A       +LFE  P S   L  +D ++ DPPR GAV    
Sbjct: 313 GLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHFDKMLIDPPREGAVEVVK 372

Query: 387 ALAGSKVPRVVGVSCNPASFARDARVLV-DGGYRLVKLWPVDQFLWSAHVELVGLFER 443
           AL      R+V VSCNP++ ARDA +LV   GYR      V+ F  ++HVE + LFE+
Sbjct: 373 ALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVNMFPHTSHVESIALFEK 430