Pairwise Alignments

Query, 344 a.a., Psp operon transcriptional activator from Azospirillum sp. SherDot2

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  233 bits (594), Expect = 7e-66
 Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 24/331 (7%)

Query: 5   PPSLLGESPAFLATLTHVSRVAPLERPVLVIGERGTGKELIAARLHYLSQRWDRPFIKMN 64
           P  ++G+S +    +  ++ +AP E  VLV GE GTGKELIA  +H  SQR   P++ +N
Sbjct: 144 PAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVN 203

Query: 65  CAALPESLLDSELFGHEAGAFTGATRRQIGRIEQADGGTLFLDEIATASPAVQEKLLRAV 124
           CAAL E+LL+SELFGHE GAFTGA +R+ GR + AD GT+FLDEI   S  +Q KLLRA+
Sbjct: 204 CAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAI 263

Query: 125 EYGEIERVGG-RTATVDVRVVGATNADLPALAAAGRFRADLLDRLAFDVVTLPPLRARPD 183
           +  EI+RVG  +T  VDVR++ ATN DL A   AGRFR DL  RL    + +PPLR R +
Sbjct: 264 QEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVE 323

Query: 184 DIPPLAEHFALGMIRELQRPLFPGFTDAALDRLCGHDWPGNVRELRNAVERSVAAADPDE 243
           DIP LA HF L    E       GFT  A+DRL  HDWPGNVREL NA ER+V       
Sbjct: 324 DIPLLAGHF-LRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAERAVV------ 376

Query: 244 PLDHIVLDPFESPWRPAVAPTARPEAARQDIASPQAKAPAPTFDGGILDQVRTFEASILR 303
               +++  +       ++    P A         A    P F+G  L+++   E + + 
Sbjct: 377 ----LLVGEY-------ISERELPHAIAG--GDGDATCAVPRFNGMTLEEI---ERAAIL 420

Query: 304 DALERNRFNQRQTAEALGLGYHQLRGMLKKH 334
           DA++ +  N+ + A  LG+    L   L ++
Sbjct: 421 DAMDASEGNKSEAARRLGITRKTLHAKLNRY 451