Pairwise Alignments

Query, 536 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Azospirillum sp. SherDot2

Subject, 504 a.a., peptide ABC transporter from Sinorhizobium meliloti 1021

 Score =  176 bits (447), Expect = 1e-48
 Identities = 145/518 (27%), Positives = 244/518 (47%), Gaps = 36/518 (6%)

Query: 9   IAQTVLGAAVLALTGFAAPALADTPKDALVMAWQFDDIVSLDPGEIFELSGAEYSAQVYD 68
           I +    AA++   G+A  A        ++   + +D  + DP +  +       + V+D
Sbjct: 8   IGRAAFAAALMLSAGYAEAA-------GILSIGRREDSTTFDPIKSAQNVDNWVFSNVFD 60

Query: 69  RLIHFDVNDVSKIEGEAAESWTVSPDGKTFTFKIRDGIAFHSGNPMTAEDVAWSFSRAVK 128
            L+  D    +K+E   AESWT+S DG T+TFKIRD   F  G+P+TAED A+S  R ++
Sbjct: 61  VLVRVDKTG-TKLEPGLAESWTLSDDGLTYTFKIRDA-KFSDGSPITAEDAAFSLLR-IR 117

Query: 129 MNKGPAFILTQFGLTPENVDQMVRATDPKTLVFTTDKVYAPTFVLYCLTADVASIVDSKL 188
            ++G  +  +        + +   A DPKTLV       AP   L  L     S++  K 
Sbjct: 118 DHEGSLWSDSY------KIIETAEAADPKTLVVKLKTPSAP--FLSTLALPNVSVLSKKA 169

Query: 189 VKGKEKDGDFGAGWLKTNSAGSGPFILKQWKASELLTFDANPKYWRG-APKLKRVLIRHI 247
           V+  E        + +  +A SG F +K+W+  + +  + NP +W+    KL  V    +
Sbjct: 170 VEAGED------AFAELPTASSGAFTVKEWRRGDRVILEKNPNFWQADRVKLDGVEWISV 223

Query: 248 PEPATQRLLLEKGDVDVARNLKPEQFEPLKSSDAIRLVQAPKGTLWYLSLNQKNATLAKP 307
           P+  T+ L ++ G +D A  +   + E LK    + +         +L +N ++  LAK 
Sbjct: 224 PDDNTRMLNVQAGQLDTAIFVPFSRVEELKKDPNLTVHIDTSTREDHLLINHEHGMLAKK 283

Query: 308 EVREAFKYLVDYDGMAGSIMNGIGAVHQAFLPKGFLGAVNDN-PYKYDPAKAKELLAKAG 366
           EVR+A    +D   +  ++  GIG V  +++PKG L   + N  Y YDP KAK +LA+AG
Sbjct: 284 EVRQALDMAIDKKAIVDTVTFGIGTVANSYIPKGSLYHYDANYQYPYDPEKAKAMLAEAG 343

Query: 367 YPEGFTVSMDVRNTNPT-QDMAQAIQASAAKAGIKIEIIPGDGKQVLTKYRARNHELMIQ 425
             +  T++  V   N   + +A  +Q   AKAG+ + +   D  Q      A ++++ + 
Sbjct: 344 ASD-LTLNYVVNAGNEVDEQIAVLLQQQFAKAGVTVNLQKVDASQSWDMLVAGDYDISVM 402

Query: 426 QWGADYQDPNSNADTFASNPDNSDNAKSKPLAWRNAWDIPELTRKTAAAIEERDGAKRAQ 485
            W  D  DP+    TF    D + N  ++     N+  + EL    AAA  E D AKR  
Sbjct: 403 YWTNDVLDPDQKT-TFVLGHDTNMNYMTR----YNSEKVKEL---VAAARLELDPAKREA 454

Query: 486 MYEELQRSVLADSPFVIMFQQTEMVAERKSVSGLVWGP 523
           MY ++Q++   D  ++ ++    +   RK++      P
Sbjct: 455 MYVDIQKTAKDDVHWIDLYYSPYLNVSRKNIENFYQNP 492