Pairwise Alignments

Query, 536 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Azospirillum sp. SherDot2

Subject, 536 a.a., ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25-INTG

 Score =  311 bits (797), Expect = 4e-89
 Identities = 174/483 (36%), Positives = 274/483 (56%), Gaps = 5/483 (1%)

Query: 13  VLGAAVLALTGFAAPALADTPKDALVMAWQFDDIVSLDPGEIFELSGAEYSAQVYDRLIH 72
           VL AA++   G      A TP D L++     +++SLDP     L  +E +A +YD L+ 
Sbjct: 11  VLAAALVV--GAVPVVQAKTPADQLIVGMSMINLLSLDPAAATGLDVSEINANLYDMLLV 68

Query: 73  FDVNDVSKIEGEAAESWTVSPDGKTFTFKIRDGIAFHSGNPMTAEDVAWSFSRAVKMNKG 132
            DV    ++    AE W VS D KT TF +R  + F SGNP++A+DVAWS  R +K+N  
Sbjct: 69  QDVARPDQLVPALAERWQVSDDRKTLTFNLRTDVKFQSGNPLSADDVAWSLQRVLKLNLA 128

Query: 133 PAFILTQFGLTPENVDQMVRATDPKTLVFTTDKVYAPTFVLYCL-TADVASIVDSKLVKG 191
            A     +G + +NV++ +RATDP T V    +   P  VL  L T+  A I+D K V  
Sbjct: 129 LASTWKAYGFSADNVERYMRATDPNTFVIELPRPTDPQLVLNTLATSPSAFILDRKTVLE 188

Query: 192 KEKDGDFGAGWLKTNSAGSGPFILKQWKASELLTFDANPKYWRGAPKLKRVLIRHIPEPA 251
            +K+ D GA WL T++AGSG F+L  W+A++++       YW G  KLKR+++R++ E  
Sbjct: 189 HQKNNDMGAAWLVTHAAGSGAFVLNDWRANDVILMTRFDGYWGGPAKLKRIVMRNMTESQ 248

Query: 252 TQRLLLEKGDVDVARNLKPEQFEPLKSSDAIRLVQAPKGTLWYLSLNQKNATLAKPEVRE 311
           + RL++E+GD+D+A+ +     + L+ +  +R     +GTL+Y++L+ K    A   VR+
Sbjct: 249 SLRLMIERGDLDIAKGMSAPDIQALQGNPKVRTQTLQRGTLYYVALSVKQPMFADARVRK 308

Query: 312 AFKYLVDYDGMAGSIMNGIGAVHQAFLPKGFLGAVNDNPYKYDPAKAKELLAKAGYPEGF 371
           A + L+DY G+  ++M   G ++Q  LP G    + D  Y+ +  +AK LLA+AGYP GF
Sbjct: 309 AVRSLIDYQGINQTVMPHYGLINQRPLPLGLAARLPDPGYRLNVEEAKALLAQAGYPNGF 368

Query: 372 TVSMDVRNTNPTQDMAQAIQASAAKAGIKIEIIPGDGKQVLTKYRARNHELMIQQWGADY 431
             ++ V    P  ++A  +Q++ A+AGI+  II G G Q+    R R+ ++++ + G   
Sbjct: 369 KTTIRVLAEPPFINIASNLQSTLAQAGIEASIITGTGNQIYGAMRERSFDIIVGRGGGGA 428

Query: 432 Q-DPNSNADTFASNPDNSDNAK-SKPLAWRNAWDIPELTRKTAAAIEERDGAKRAQMYEE 489
           +  P+S+  T   NPDN D AK S    WR ++  PEL +    A  E DGAK+   Y +
Sbjct: 429 ERHPHSSLRTLVYNPDNRDEAKLSNFQGWRTSFYSPELNQLIERAEVEPDGAKQLAQYRQ 488

Query: 490 LQR 492
           +Q+
Sbjct: 489 VQQ 491