Pairwise Alignments

Query, 639 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score =  146 bits (369), Expect = 4e-39
 Identities = 126/420 (30%), Positives = 181/420 (43%), Gaps = 56/420 (13%)

Query: 222 KEAGRFTEARRAYESGLAVDPAAAELWNNRSNVLKGLDELDAALTGQRRAAALRPDEIGI 281
           KE G  T  RRA    +A+DP     +NN  N+L+    L  AL    +A A+ P  +  
Sbjct: 57  KETG-ITLLRRA----IALDPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAA 111

Query: 282 RSNLGDALLLAGHPEEALANTQAVLALAPDLGESQLLRALALLTLGHFEEGWAAWEDRWT 341
           R N    L   G P  AL + Q +L   PD  E +   A A L +G ++ G  A+E R  
Sbjct: 112 RFNRAITLQKLGDPATALQDYQQLLEADPDNPEIRYNSAHAALAIGDWDFGLPAYEARCQ 171

Query: 342 -VQPWLFAAGRFPQPAWTGRPLGGNRLLIWGEQGIGDEIQFASLLPLLVRAGVSCVLECE 400
            +Q +         P W G+ L    LL+WGEQG GD +  A                  
Sbjct: 172 QLQHFPEIEASLKLPRWQGQDLDQQTLLVWGEQGFGDRLMGA------------------ 213

Query: 401 PRLVPLFARSLPEVEVVARGWPPDPSLTRT-EAAAPDRAPIAA----------QIPAGSL 449
            R +PL  +  P+  +V   W   PSL R  +  A DR  + A          Q+P  SL
Sbjct: 214 -RWIPLLRQRYPQARIV---WQTSPSLVRLFQTLADDRLMVLAEGAELPVCDWQVPLLSL 269

Query: 450 PRLL-ADAGGVPRSAAPYLLADPARISGFRTANPAGTLAVGIAWHT-TNP----KHGRSR 503
             +  +D   +P    PY          F  A+    L  G+ W    NP    +   ++
Sbjct: 270 MLIFQSDRNRLPWHG-PYFFPHKG---DFLPASDRPRL--GLVWSAGRNPAQSAEFAANK 323

Query: 504 NIPLRVLAHALHRPGVRLVVLQYGDWTQEIAALTADGIDIGGLPGLDPWGDLDGLAAAVA 563
           + PL +L   L   G  +V LQ  +  Q++  L+   +D+G        GD       +A
Sbjct: 324 SCPLALLWSVLSVSGWDVVSLQVDEARQDLQTLSDPLLDLGS-----EIGDFQDTVDRLA 378

Query: 564 AVDLVVSIDNVTVHLAGALGRPTCALLPYAAEWRWLRDRTDTPWYPTVTLCRQQAPKDWS 623
            +DL++++D    HL G +G PT  LLP   +WRW      TPWYP++ L RQ +P DWS
Sbjct: 379 HLDLLITVDTAIAHLGGMIGLPTWVLLPAVPDWRWELSGATTPWYPSLRLFRQPSPGDWS 438



 Score =  135 bits (340), Expect = 8e-36
 Identities = 131/455 (28%), Positives = 197/455 (43%), Gaps = 45/455 (9%)

Query: 200 LRRALILDPLHHGIWNGLGRLHKEAGRFTEARRAYESGLAVDPAAAELWNNRSNVLKGLD 259
           +R+A+ + P        LGR  K+ G +  A +A      + P  AE W+ RS++    +
Sbjct: 489 IRQAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYDN 548

Query: 260 ELDAALTGQRRAAALRPDEIGIRSNLGDALLLAGHPEEALANTQAVLALAPDLGESQLLR 319
           +L AAL    +A AL+        + G      G   E+ A+  A  A+AP+    +  R
Sbjct: 549 QLTAALNSLNQAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAIAPESPLLRCNR 608

Query: 320 ALALLTLGHFEEGWAAWEDRWTVQ----PWLFAAGRFPQPAWTGRPLGGNRLLIWGEQGI 375
               L  G++ +GW   E R+  Q    P+ +   R   PAW G PLG   LLIWGEQG+
Sbjct: 609 GFLQLHWGNWLQGWPDLEVRFDFQSDLDPFQY---RQLAPAWQGEPLGQQTLLIWGEQGL 665

Query: 376 GDEIQFASLLPLLVRAGVSCVLECEPRLVPLFARSLPEVEVVARGWPPDPSLTRT-EAAA 434
           GD + F   LP             E RL        P+ +++   +  DP L R  +  A
Sbjct: 666 GDHLLFCRWLP-------------ELRL------QHPQAQLI---FVTDPLLERLMQQLA 703

Query: 435 PDRAPIAA-QIPAGSLPRLLADAGGVPRSAAPYLLADPARISGFRTANP----AGTLAVG 489
            DR  I     P  +  R +A    +P  A       P R + F+++ P    A TL VG
Sbjct: 704 DDRLQICCLDEPVPACDRQVA-LMSLPAIAQTTPATVPWRGAYFQSSMPPLRCAETLQVG 762

Query: 490 IAWHT---TNPKHGR---SRNIPLRVLAHALHR-PGVRLVVLQYGDWTQEIAALTADGID 542
             W +   ++P+  R    ++ PL  L  AL   P V     Q G    E+         
Sbjct: 763 FVWASGKRSSPETARLYREKSCPLNELLPALLAVPAVDYYSFQVGADVAELQPWLEQSDR 822

Query: 543 IGGLPGLDPWGDLDGLAAAVAAVDLVVSIDNVTVHLAGALGRPTCALLPYAAEWRWLRDR 602
           +  L   +   D    A  +A +D+++S+D    +LAG +  P   LLP  A WRW    
Sbjct: 823 LFDLS--EQLQDFQDTADWLAEMDVLISVDTAVANLAGMMALPVWTLLPEPANWRWGLTG 880

Query: 603 TDTPWYPTVTLCRQQAPKDWSVPLRLARQRLDELA 637
             TPWYP++ L RQ    +WS  +   +Q L +L+
Sbjct: 881 HTTPWYPSMRLYRQTQRGNWSGAIAQIQQDLQQLS 915



 Score = 67.0 bits (162), Expect = 4e-15
 Identities = 47/142 (33%), Positives = 67/142 (47%)

Query: 11  AFDLHQERRFDEADAIYRQILDAVPDHVMTLHLRGILLGQSGRLEEGCGLIRQAIAGDGT 70
           A   +Q   F+ A A   ++L  VPD    L L+G+      + E G  L+R+AIA D T
Sbjct: 14  AIAAYQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIALDPT 73

Query: 71  QPDFHTNLAGLLEALGRSGEALDPMVRAATLDPTRTVQLNDFAMRSLKAGRPGEAAQALR 130
            P    NL  LL+  G   EAL+ + +A  +DPT      + A+   K G P  A Q  +
Sbjct: 74  DPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQDYQ 133

Query: 131 AAVGVQPLSIELRCNLAVALAA 152
             +   P + E+R N A A  A
Sbjct: 134 QLLEADPDNPEIRYNSAHAALA 155



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 27/114 (23%), Positives = 47/114 (41%)

Query: 60  LIRQAIAGDGTQPDFHTNLAGLLEALGRSGEALDPMVRAATLDPTRTVQLNDFAMRSLKA 119
           LIRQA+A    +P FH  L   L+  G    A   +  A  L PT+    ++ +      
Sbjct: 488 LIRQAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYD 547

Query: 120 GRPGEAAQALRAAVGVQPLSIELRCNLAVALAADRQGAAAAAERRIALLLAPDA 173
            +   A  +L  A+ +Q  + +   +  V      Q   + A+   A  +AP++
Sbjct: 548 NQLTAALNSLNQAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAIAPES 601