Pairwise Alignments

Query, 781 a.a., ATP-dependent DNA helicase PcrA from Azospirillum sp. SherDot2

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  858 bits (2218), Expect = 0.0
 Identities = 466/856 (54%), Positives = 574/856 (67%), Gaps = 84/856 (9%)

Query: 1   MSDAYDDDPLSHAAPAA---GPASGFPAA--------AQRFAYLDGLNPTQRAAVEALDG 49
           M+  +DD P     PA      A G  AA        AQR  Y+ GLNP QR AVEAL+G
Sbjct: 1   MTKGFDDIPFFDEEPAPRKPAAADGGIAARAMAARDKAQRPDYVSGLNPEQREAVEALEG 60

Query: 50  PVLVLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFTNKAAREMRERVGHLMGIEPE 109
           PVLVLAGAGTGKTRVLTTR+AH+L T RA   QILAVTFTNKAAREM+ER+G L+G   E
Sbjct: 61  PVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVE 120

Query: 110 GW-WLGTFHALAARILRRHAELVGLKSNFTILDTDDQVRLIKQLLQAENIDSKKWPPRQV 168
           G  WLGTFH++  ++LRRHAELVGL+S+FTILDTDD VRLIKQL+QAE +D K+WP +Q 
Sbjct: 121 GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF 180

Query: 169 LGAIERWKDRGLTPDRLGDADGGDVAGGRVVAIYRAYQERLRTLNACDFGDLLLHNLAIF 228
            G I+ WK++GL P ++ + D    A G+   +Y AYQ RL TLNACDFGDLLLH + +F
Sbjct: 181 AGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF 240

Query: 229 QNHPDVLAEYHRKFKYLLVDEYQDTNVAQYLWLRILSQAHK------------------- 269
           + +PDVL EYH KF+Y+LVDEYQDTN AQY+WLR+L+Q  +                   
Sbjct: 241 RANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQASRNRPSSGLPATFSPSDG 300

Query: 270 ----------------------------NICCVGDEDQSIYAWRGAEIGNILRFETDFPG 301
                                       NICCVGD+DQSIY WRGAE+ NILRFE DFPG
Sbjct: 301 EKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPG 360

Query: 302 ATIVKLEQNYRSTGHILAAASGLIANNQGRLGKTLWTEADG--GERVKVKAVWDGEEEAR 359
           A ++KLE+NYRST HIL AA+ LIA+N+GRLGKTL+TE      E+V V A WD EEEAR
Sbjct: 361 AKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEAR 420

Query: 360 WVGEEIETLQRKGTSLAQIAVLVRAGFQTREFEERFITLGLPYKVLGGPRFYERQEIRDA 419
            +GEEIE LQRK  +L  I++LVRA FQ REFE+RF+TLGL Y+V+GGPRFYER EIRDA
Sbjct: 421 AIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDA 480

Query: 420 LAYFRVVNSGDDDLAFERIVNLPKRGVGPAAMQSLYTAARARGLSLTEAGWALTETDELK 479
           +AYFR+V    DDLAFERIVN PKRG+G   +++L+  ARAR + +  A   + ETDELK
Sbjct: 481 MAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARARDIPMLAAASDIVETDELK 540

Query: 480 PKLRATLRGLLQDFFRWRTLMATVPHTELARTVLDESGYTRMWQEDKTPEAPGRLENLKE 539
           PK R  L  ++ DF RW+TL+ T PHTELA  +LDESGYT MWQ DK+ EAPGRLENLKE
Sbjct: 541 PKARKGLFDVVADFRRWQTLLETTPHTELAERILDESGYTAMWQADKSAEAPGRLENLKE 600

Query: 540 LITAMAEFENLPGFLEHVALVMENAEAAGIEQVTVMTLHGAKGLEFDHVFLPGWEEGVFP 599
           LI +M  FE++ GFLEHVALVM+  +   ++ V++MTLH AKGLEFD VFLPGWEEG+FP
Sbjct: 601 LIRSMEAFESMRGFLEHVALVMDAEQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFP 660

Query: 600 NQRALDETGIAGLEEERRLAYVGLTRARRRAYVSHAANRRLYGNWVSAVPSRFVEEIPQD 659
           +QRALDE G AGLEEERRLAYVG+TRA+RR ++   +NRR++G W S +PSRF++E+P  
Sbjct: 661 HQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSRFLDELPIA 720

Query: 660 NVEAEAANGLFAGSGGRGGFAGG----AGAYGAGGSAGGFGGGFQFRGS-------TRQA 708
           +VE  A   +  G  GRGG+       A  +       G+    Q R         TR  
Sbjct: 721 HVEV-AEQEVSYGGYGRGGYGQSRFDKADPFENNYQTPGWKRAQQHRSEATRDNWGTRSG 779

Query: 709 PA----------PKTITLDQGAYAVAPRPRPDAPFAKGARVFHQKFGYGTVVGVSEDKLE 758
            A          P+T T++    A +    P   F  G RVFH KFG G +  +  +KL 
Sbjct: 780 HAIERIGYGESGPRTRTIEGELVAKSTSAEPSR-FNVGDRVFHIKFGNGNIAAIEGNKLT 838

Query: 759 IDFDHSGSKKVMDSFV 774
           IDFD +G K+V+D FV
Sbjct: 839 IDFDRAGQKRVLDGFV 854