Pairwise Alignments

Query, 934 a.a., DNA topoisomerase 1 from Azospirillum sp. SherDot2

Subject, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

 Score =  458 bits (1178), Expect = e-133
 Identities = 274/667 (41%), Positives = 377/667 (56%), Gaps = 76/667 (11%)

Query: 3   GSNVVIVESPAKAKTINKYLGDDYTVIASFGHVRDLPA---------------------- 40
           G ++VIVESPAKAKTINKYLG D+ V +S GHVRDLP                       
Sbjct: 2   GKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTT 61

Query: 41  ---------------RDGSVRPDEDFAMEWELGDRSKRHIDEIAKAVKSADRIYLATDPD 85
                          +   V P   +   +++    ++ + E+ K  K AD +YLATD D
Sbjct: 62  DKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLD 121

Query: 86  REGEAIAWHLSELLREKHLSDNRDVQRVTFNEITKSAVQTAMANPRAVSQELVDAYLARR 145
           REGEAIAWHL E++      D +  +RV FNEITK+A+Q A   P  ++ + V+A  ARR
Sbjct: 122 REGEAIAWHLREIIG----GDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARR 177

Query: 146 ALDYLVGFTLSPVLWRKLPGSKSAGRVQSVALRLICERESEIEVFKPQEYWSIAVGFTTP 205
            +D +VGF +SP+LW+K+    SAGRVQSVA++L+ ERE EI+ F P+E+W I     T 
Sbjct: 178 FMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTA 237

Query: 206 AGSSFTASLTQLDGKRLDKFGLPNREVAEAAVARIRPQAFAVSTVERKQSRRNPSPPFTT 265
               F   + Q DG     F   N   A AAVA +    + V   E K +   PS PF T
Sbjct: 238 DKQDFRLLVAQKDGLA---FKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFIT 294

Query: 266 STLQQEASRKLGFGATRTMRTAQKLYEGVDIGGETVGLITYMRTDGVSLSQEAIDGARGL 325
           STLQQ AS +LG+G  +TM  AQ+LYE         G ITYMRTD  +LS EA++  RG 
Sbjct: 295 STLQQAASTRLGYGVKKTMMLAQRLYEA--------GYITYMRTDSTNLSAEAVENLRGY 346

Query: 326 IGSHYGERYVPAQPRVYKTAAKNAQEAHEAIRPTDLHRRPDSVAGYLGSDELRLYELIWK 385
           I  HYGE Y+P+QP VY +  +NAQEAHEAIRP+D+    D + G + +D  +LY LIW 
Sbjct: 347 ITKHYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDLEG-MEADAHKLYALIWN 404

Query: 386 RTLASQMESAVLDQVAVDIASPSKDVVLRATGSIVVFDGFLKVYQEDRDDAAEDDQQERR 445
           + +A QM  A  D   V + +   +  L+A G I+ FDG+ +V    R     +DQ    
Sbjct: 405 QFVACQMTPAQYDSTTVSVKAA--EYTLKAKGRILKFDGWTRV---QRPLGKNEDQI--- 456

Query: 446 LPAMDQGDDLSRGDIDPEQHFTQPPPRYSEASLVKKLEELGIGRPSTYASILQVLQDRNY 505
           LP +  GD L    +DP+QHFT+PP RY+EA+LVK+LE+ GIGRPSTYASI+  +QDR Y
Sbjct: 457 LPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGY 516

Query: 506 VRLDKRRFIPEDRGRLVTAFLENFFHRYVEYNFTAELENQLDEISDGKIDWKTVLRDFWT 565
           V++D+RRF  E  G +VT  L+  F   + Y+FTA +E +LD+I++G+++W  VL +F+ 
Sbjct: 517 VKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFA 576

Query: 566 AFDVAVNGTKDLTITQVLTTLDNELGAHFFPAATEDGHDPRVCPVCREGRLGLKLGKMGA 625
            F      ++DL   +   +L      H             +CP C    +G++    G 
Sbjct: 577 DF------SRDLETAEQDESLGGMKPNHIVMTNI-------LCPTCSR-PMGIRTASTGV 622

Query: 626 FIGCSRY 632
           F+GCS Y
Sbjct: 623 FLGCSGY 629