Pairwise Alignments

Query, 492 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 955 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  190 bits (483), Expect = 2e-52
 Identities = 142/489 (29%), Positives = 245/489 (50%), Gaps = 56/489 (11%)

Query: 18  LDALRAKVMVADADLTIVHVNPAVVELLREAEGDLRKELPRLDVSRLVGSNIDVFHKNPS 77
           LD +   VMVAD    I+++N AV ++ R  E D+R++LP    + L+GSNIDVFHKNP+
Sbjct: 445 LDNVATNVMVADDQHNIIYMNKAVEDMFRRVEDDIRRDLPDFRAATLLGSNIDVFHKNPA 504

Query: 78  HQRTMLASLTKPHSATIKVGGHQFDLLVTP-LTEDGQRIGFVVEWADAKDRLQNLDYAAQ 136
           HQR +L+ L+  H AT+ +GG  F L VTP + E G R+G  VEW    DR   +   A+
Sbjct: 505 HQRGLLSRLSGSHRATVHLGGRTFSLTVTPVVNERGIRLGSAVEWL---DRTAEVAVEAE 561

Query: 137 MTAINRSQAVIEFTTEGIITRANDNFLKVMGYRLDEVVGKNHSMFVETAYRDSADYARFW 196
           +  I    A  +FT   ++    D F +    +L E + +     +ET+ +   D AR  
Sbjct: 562 VADIVNGAANGDFTRR-LVLEGKDGFFR----QLSEGINR----LLETSQKGLDDVARML 612

Query: 197 ETLRRGEFQA---AQYKRIAKSGKPVWIEGAYNPILDETGRIVKVVKFAVDVTAQVSLLN 253
             + +G+  +   A Y     +G    ++   N  +++   IV+ +K A +       +N
Sbjct: 613 NAMSQGDLTSRIEADY-----AGTFGQLKNDANSTVEQLKEIVERIKGATEA------IN 661

Query: 254 NLKIMIDKNFGEVDRALRLSMGEAESANHAAGSTSASVQAVAASAEELVASIGEISQSMT 313
                          A  ++ G  + ++      S S++  A+S E+L +++ + + +  
Sbjct: 662 T-------------AAQEIASGNTDLSSRTEEQAS-SLEETASSMEQLTSTVKQNADNAR 707

Query: 314 RARAATDGAFDRTVTVAESTDRLAAAAQAMN-------GIVGMINSIAGQINLLALNATI 366
            A     GA    V   E  +++     A++        I+G+I+ IA Q N+LALNA +
Sbjct: 708 TANELASGAQQVAVKGGEVVEQVVQTMGAIHHSSSKIADIIGVIDGIAFQTNILALNAAV 767

Query: 367 EAARAGEAGKGFAVVASEVKNLANQAGKATEQISA----EIEGIQSTSTEVATALSAIRE 422
           EAARAGE G+GFAVVA+EV+NLA ++  A ++I A     +E +++ S  V +A   + E
Sbjct: 768 EAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALISDSVEKVENGSRLVDSAGRTMEE 827

Query: 423 AVAAVREHVTGTASAVEEQSAVTQNMSSNMQSASAAVATVTSNVAAISSAVSQVSGAVER 482
            V +++      A  + + +  ++  S+ ++    AV+ +       ++ V + + A E 
Sbjct: 828 VVTSIKR----VAKIMADIAEASREQSAGIEQVGLAVSQMDEVTQQNAALVEEAAAAAES 883

Query: 483 TKEAAHVLV 491
            +E AH L+
Sbjct: 884 LEEQAHGLM 892



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 152 EGIITRANDNFLKVMGYRLDEVVGKNHSMFVETAYRDSADYARFWETLRRGEFQAAQYKR 211
           +G IT  N +F+++ G+   E++G+ H++ V      S  YA  W  L+ G       K 
Sbjct: 27  KGQITYINRDFIEISGFTEAELIGEPHNI-VRHPDMPSEAYADMWTHLKAGRPWTGLVKN 85

Query: 212 IAKSGKPVWIEGAYNPI 228
             K+G   W+E    PI
Sbjct: 86  RCKNGDHYWVEANATPI 102