Pairwise Alignments

Query, 1454 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 1385 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 2e-18
 Identities = 83/387 (21%), Positives = 153/387 (39%), Gaps = 31/387 (8%)

Query: 1036 GSLRLDVRAGGTVGKPALGGSVVLANGRYENRASGAVITNIEARLAGDGDVFTIQSFRGR 1095
            G L   +   GT+  P + G+V L  G     A+  +I  I+  +   G      S +GR
Sbjct: 984  GLLTSKLNFAGTLDAPEVSGNVSLTQGALALTANPTLINKIDMSMDLGGQQ---ASLKGR 1040

Query: 1096 TRNGGAISASGVIRPGAPADRQLDIALQADNARLVEIDLVTAEIGANLTLTGGFANARLA 1155
               G  +                ++A++ D   +++  L   +I  +LT+        + 
Sbjct: 1041 WMMGNGLGRIIGEMRWPQGQFSGELAVKGDKLAVIQPPLALLDISPDLTIAFSSRQLEVK 1100

Query: 1156 GPVDIRRAEIQVPDRMPANVVDLKVTEVGKGRRARGTTQVSTAGGTRRVPQPAETPPAAT 1215
            G VD+    I             K+ ++ +G  A     V            A T P A+
Sbjct: 1101 GVVDVPSGSI-------------KIVQLAEGGVALSEDVVFD-------DSIAATQPKAS 1140

Query: 1216 TFVLALDMTVNAPNQIFVRGRGLDAELAGNLRVKGTAAAPEVT-GRFNILKGSLNLLAKN 1274
             + +  D+ +N  N + V G GL  +L G L+++  A  P +  G   + +GS   + + 
Sbjct: 1141 PYAIVADLNINVGNDLKVDGMGLKGKLQGTLKLQQQAFRPPLLFGDIKVKQGSYKFMGQT 1200

Query: 1275 FEFKRGIFDFDGTQPIDPRLDLLA--EATANGITADVVVSGTARQPKIELTSPQGLPQDE 1332
             + + G   F G   + P L++ A  E  +  + A V V+GT  +P + L S     Q E
Sbjct: 1201 LKIRAGEVQFVGPISV-PNLNIEAIREIKSEDLIAGVRVTGTPARPVVTLFSNPAKEQAE 1259

Query: 1333 VLAGVLFGKSVGDLSAAEAVQLAQSAAALAGVGGGGGGILDTVRRSLG--VDRLDFT--Q 1388
            +L+ ++ G      +  +   L   AA       GGGG ++ +  +    ++   F+  Q
Sbjct: 1260 ILSYIIKGSGFNSSNNEQNNSLMMGAALGLSSQVGGGGAINNIGNTATGIIEEFGFSNVQ 1319

Query: 1389 GENGKGGAVQAGRYVSDRVYVGVEQGI 1415
             +    G V    ++ D++ V    G+
Sbjct: 1320 LDTNDEGRVAISGFIGDKLMVKYGVGV 1346



 Score = 32.7 bits (73), Expect = 3e-04
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 763  LTAKADVADALGTPSGKTRVEMTDGNAAGTELRSVTASVDGSLAKAGFQATAAGAGAQPV 822
            LT+K + A  L  P     V +T G  A T   ++   +D S+   G QA+  G      
Sbjct: 986  LTSKLNFAGTLDAPEVSGNVSLTQGALALTANPTLINKIDMSMDLGGQQASLKGRWMMGN 1045

Query: 823  ALD-LAGNLT-QEGQVT---RIRLDRLQARYAGEDLRTTAP-ATILLADRRYEVK-ELRL 875
             L  + G +   +GQ +    ++ D+L        L   +P  TI  + R+ EVK  + +
Sbjct: 1046 GLGRIIGEMRWPQGQFSGELAVKGDKLAVIQPPLALLDISPDLTIAFSSRQLEVKGVVDV 1105

Query: 876  SSGNARLAADLGLNGDRLSGELTIDRLPLALAKLASPTLALDGVANARASLGGTLRNPRA 935
             SG+ ++   L   G  LS ++  D    A    ASP      VA+   ++G  L+    
Sbjct: 1106 PSGSIKI-VQLAEGGVALSEDVVFDDSIAATQPKASPYAI---VADLNINVGNDLKVDGM 1161

Query: 936  DATLRVSG-LKVQQ 948
                ++ G LK+QQ
Sbjct: 1162 GLKGKLQGTLKLQQ 1175



 Score = 28.9 bits (63), Expect = 0.004
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 1230 QIFVRGRGLDAELAGNLRVKGTAAAPEVTGRFNILKGSLNLLA 1272
            + F +   L+  L   L   GT  APEV+G  ++ +G+L L A
Sbjct: 974  EFFPQLNTLEGLLTSKLNFAGTLDAPEVSGNVSLTQGALALTA 1016



 Score = 28.1 bits (61), Expect = 0.006
 Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 27/247 (10%)

Query: 464 LTLSANADDLAPLSGLAGRPL-------AGAVALAGPVKRGADGTLTADLTGSLDRLSTG 516
           L + AN   +A L  L  + L        G ++L    +  AD +L   +T         
Sbjct: 391 LDIEANLTQVAELPELIHQQLKLKLTDSVGQLSLHALAQGDADFSLEGQITLK------- 443

Query: 517 TPADAVLGDKATLKLAARMEP--DGAMRLTDLTVDGRNGKLTGNAALADNKVDARTTLTV 574
              D  L  KATL+ A    P  +    ++DLT++ + G L   AA     +DA      
Sbjct: 444 ---DPALTYKATLEKARLQWPLNNPEYIVSDLTLNSQ-GSLNKQAAT----IDANVISPF 495

Query: 575 AKLEPLGGALGTPMEGAATLEATARGPLDAIEAQATLNARDLVVQGRRLGATEVKATAAG 634
            K+  +   L       +  + +A+G L A++ +  L+  + +    ++   ++K     
Sbjct: 496 HKILAIRSELHHQDTKLSIKQFSAKGELGAVDVEGELDYANAMTWKAKVLLDKLKLQEIT 555

Query: 635 LPATPNGTVSARTNLDKTPLSVDGRYALREQTLRLDGLTVANGANRITGQA-QVALDTLL 693
           LP T      A +   KTP +     A       + G    +G  R+   A QV+L    
Sbjct: 556 LPETAQTKEPAPSKDTKTPQNNAAAPATSLPNSLISGQLQTSG--RLQDNAWQVSLTETQ 613

Query: 694 ATGRLEG 700
            +G ++G
Sbjct: 614 LSGTMQG 620