Pairwise Alignments

Query, 548 a.a., Multidrug resistance protein MdtA from Azospirillum sp. SherDot2

Subject, 409 a.a., periplasmic component of efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  181 bits (460), Expect = 4e-50
 Identities = 122/348 (35%), Positives = 182/348 (52%), Gaps = 78/348 (22%)

Query: 38  YRLARVEQGPLVSAITATGTMSALVTVEVSSQLSGQIAELYADFNSRVTSGQILARLNGD 97
           Y  A V +G + +++TATGT+  ++ VEV +Q+SG I ++Y D+NS VT GQ++A ++  
Sbjct: 35  YASATVSKGDISNSVTATGTIEPVIEVEVGTQVSGIIDKIYVDYNSVVTKGQLIAEMDRV 94

Query: 98  QLAARLAQAGADVDSAKAALIQQQALLDKARADLANANASIANADAQIVRADLAQRDAER 157
            L + LA               QQA  D A+A+                  +  +++ ER
Sbjct: 95  TLQSELAS--------------QQATYDGAKAEF-----------------EYQKKNYER 123

Query: 158 DLWRRRDLQGRGVVAAADLEKAETAAHSAQAQLIAARAQKRQAEAAEASAEASLAVAAAQ 217
                + L  + +++  D E+A                  ++A++A  S++ASLA A   
Sbjct: 124 S----KGLHDKSLISDTDYEQA--------------LYNYQKAKSAFDSSKASLAKAER- 164

Query: 218 VEVARAQVAQREAALQLVRVDLNRSVIRSPIDGVVVNRAVSTGQTVAASLSAPTLFTIAQ 277
                               +L+ + I SPIDGVV++R V  GQTVA+    PTLFTIA 
Sbjct: 165 --------------------NLSYATITSPIDGVVISRDVEAGQTVASGFETPTLFTIAA 204

Query: 278 DLRQMEVLANIDEADIGRVREGMAVRFTVNAFPGDSFTGRVAQVRL--------APKEDQ 329
           DL QM+V+A++DEADIG + EG    FTV+A+P D F G V Q+RL        A     
Sbjct: 205 DLTQMQVVADVDEADIGGIEEGQRASFTVDAYPNDVFDGVVTQIRLGDASSSSSASSSTS 264

Query: 330 TVVTYIVVITVENPELRLLPGMTANLRITVDERPSAVKLPNAALRFRP 377
           TVVTY VVI+  NP+L+L P +TAN+ I + ++   + +PN ALRF P
Sbjct: 265 TVVTYEVVISAPNPDLKLKPRLTANVTIFILDKKDVLSVPNRALRFTP 312



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 505 PVRLGIGDGSFTELVSGDLRAGQEVIT 531
           PV +GI +G  TE++SG +  G +VIT
Sbjct: 344 PVEIGISNGISTEIISG-VAEGTKVIT 369