Pairwise Alignments

Query, 527 a.a., ATP-dependent RNA helicase RhlE from Azospirillum sp. SherDot2

Subject, 453 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli Nissle 1917

 Score =  363 bits (932), Expect = e-105
 Identities = 199/463 (42%), Positives = 281/463 (60%), Gaps = 17/463 (3%)

Query: 1   MLFSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMI 60
           M F  LGL PD+LRA+ ++GY +PTPIQ+QAIP VL+ RD++  AQTGTGKTA FTLP++
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  DILASGR--ARARMP-RSLILEPTRELAAQVSESFETYGKYHKLSMALLIGGETFTEQVK 117
             L + +  A+ R P R+LIL PTRELAAQ+ E+   Y KY  +   ++ GG +   Q+ 
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 118 KLDRGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKN 177
           KL  GVDVL+ATPGRL+DL  +  + L+ +++ V+DEADRMLDMGFI DI R+++KLP  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 178 RQTLFFSATMPPEIRRLADAFLTQPLEISVAPPASPAETVTQALSLVHEMDKRKALRHLL 237
           RQ L FSAT   +I+ LA+  L  PLEI VA   + ++ VTQ +  V +  KR+ L H++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query: 238 QTEDVKNAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLV 297
              + +   +F   K     L + L + G    A+HG+  Q  RT  L  FK G+I +LV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 298 CSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAI 357
            +D+AARG+D++ L HV N+++P  P+DYVHRIGRTGRA   G A  L   D+ KL+  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 358 TRLIKREIPMIAIDGLETAEFGEEDSSSRGRGRGRGGRGAKPDSRSEARPPRGAREERAP 417
            +L+K+EIP IAI G E     + +    GR +  GGRG             G R ++ P
Sbjct: 361 EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGRG-----------QGGGRGQQQP 409

Query: 418 REEAAPPREERAAREERPVREERPVREERPMREERPVREERQP 460
           R   +  +   A   E+P    R + + +P  E++  R  R+P
Sbjct: 410 RRAESGAKSGNAKPAEKP---SRRLGDAKPAGEQQRRRRPRKP 449