Pairwise Alignments

Query, 527 a.a., ATP-dependent RNA helicase RhlE from Azospirillum sp. SherDot2

Subject, 488 a.a., DEAD/DEAH box helicase from Castellaniella sp019104865 MT123

 Score =  340 bits (872), Expect = 7e-98
 Identities = 193/469 (41%), Positives = 264/469 (56%), Gaps = 24/469 (5%)

Query: 3   FSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMIDI 62
           F+ LGL   +LRA+ D GYT PTPIQ QAIP VL+  D+L  AQTGTGKTA FTLP++  
Sbjct: 7   FASLGLAEPLLRAVHDAGYTHPTPIQAQAIPRVLEGGDLLAAAQTGTGKTAGFTLPILHY 66

Query: 63  LASGRARARMP---RSLILEPTRELAAQVSESFETYGKYHKLSMALLIGGETFTEQVKKL 119
           L    A +R P   R L+L PTREL AQV ES   YG++ ++   ++ GG     Q+  L
Sbjct: 67  LIQNPATSRQPGRPRVLVLTPTRELTAQVEESVRLYGRHTQIRSMVMFGGVNINPQITAL 126

Query: 120 DRGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQ 179
            + +D+L+ATPGRL+D  ++  + L+ +++ V+DEADRMLDMGFI DI R++  LP  RQ
Sbjct: 127 RKPLDILVATPGRLLDHAQQKTLDLSGVEILVLDEADRMLDMGFIHDIRRVLRLLPAKRQ 186

Query: 180 TLFFSATMPPEIRRLADAFLTQPLEISVAPPASPAETVTQALSLVHEMDKRKALRHLLQT 239
            L FSAT   EIR LA   L  P E+SVA   + +E V+Q + +  +  KR  L H+++ 
Sbjct: 187 NLLFSATFSDEIRGLAQGILHNPGEVSVARRNTTSELVSQRMVMTEQSHKRDLLSHIIRE 246

Query: 240 EDVKNAFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLVCS 299
                  +F   K     L + L + G    A+HG+  Q+ RT+ L  FK G++ +LV +
Sbjct: 247 SGWHQVLVFTRTKHGANRLAEKLAKDGLTAAAIHGNKSQAARTKALAGFKDGKVAVLVAT 306

Query: 300 DVAARGIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAITR 359
           D+AARG+D+  L  V NF++P  P+DYVHRIGRTGRAG  G A  L    + KL+ AI R
Sbjct: 307 DIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSTGSALSLVDQTEIKLLRAIER 366

Query: 360 LIKREIPMIAIDGLETAEFGEEDSSSRGRGR------------GRGGR--------GAKP 399
           L K+ I  I ++G   A     DS+   R +            GRGGR        G +P
Sbjct: 367 LTKQTIEPIVVEGWNPAAMVTGDSAPDAREKRALARLQGDLPAGRGGRRDAGTGREGHRP 426

Query: 400 DSRSEARPPRGAREE-RAPREEAAPPREERAAREERPVREERPVREERP 447
             R   RP    R   + PR   A P+  R+ R+        P R+ RP
Sbjct: 427 GQRDGQRPASAERRTGQDPRRGNARPQGARSGRDTGATSSGAPRRDTRP 475