Pairwise Alignments

Query, 662 a.a., DNA topoisomerase 4 subunit B from Azospirillum sp. SherDot2

Subject, 628 a.a., DNA topoisomerase IV, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  465 bits (1196), Expect = e-135
 Identities = 267/637 (41%), Positives = 387/637 (60%), Gaps = 38/637 (5%)

Query: 13  DSYSAQDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHASRIDLEL 72
           + Y++  IEVL GL+PV+RRPGMY   TD    +HL  EV+DN++DEA+AGHA++I++ L
Sbjct: 3   NQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVVL 59

Query: 73  TADYTVMVRDNGRGIPIDDHPKYPGKSALEVIMTTLHSGGKFSNKVYQTSGGLHGVGLSV 132
             D ++ V D+GRG+P+D HP+  G   +E+I+T LH+GGKFSNK YQ SGGLHGVG+SV
Sbjct: 60  HTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 118

Query: 133 VNALSDRLTVEIAREKQLYVQEYSRGLPQGPLAHRGNVNRRGTTIRFHADPEI-FGETAH 191
           VNALS R+ V + R+ Q+Y   +  G     L   G   RR T  R H  P+  + ++ +
Sbjct: 119 VNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSPN 178

Query: 192 FEPHRLYRLARSKAYLYRGVEIRWSCDPALLSVDATTPASETLHFPGGLQDYLNAALKDR 251
           F   +L  L R+KA L  G+ I+++        +  T      ++  GL DYL AA+ D 
Sbjct: 179 FSNSKLIYLLRAKAVLCPGLRIKFT--------NKHTNEVHEWYYESGLTDYLKAAVGDN 230

Query: 252 KTLTRLPFAGALDFPNGQGRVE---WAVAW-PDDDEGFSHTYCNTVPTPQGGTHEAGLRT 307
             L   PF G+      +G++E   WA+ W P+  E  + +Y N +PTP GGTH  G R 
Sbjct: 231 IMLPEEPFIGSF-----KGQIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQ 285

Query: 308 ALTRGLKAYGELTNNKRAG-QVTSDDVMGDACVLLSVFIREPHFQGQTKERLVTAEAQRL 366
            L   ++ + E  N    G +++ +D+   A  +LSV +++P F GQTKE+L + ++   
Sbjct: 286 GLLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAF 345

Query: 367 VETAVKDHFDHWLSGDPQSANGLLERLIEKAEERARRKQSKEMTRKSATRRLRLPGKLAD 426
           V   V+D F  WL+ + + A  L E  I  A++R   K +K++ RK  T    LPGKL D
Sbjct: 346 VSGIVRDAFSLWLNSNTELAESLAEMCINNAQKRL--KAAKKVARKKVTSGPALPGKLTD 403

Query: 427 CSRNSPEGTELFLVEGDSAGGSAKQARQRETQAILPLRGKILNVASASVDKMKANQELND 486
           CS   P   ELFLVEGDSAGGSAKQAR RE QAI+PLRGKILN       ++ A+QE++D
Sbjct: 404 CSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHD 463

Query: 487 LTQALGCGIGKDFSTDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQEGHLYLA 546
           ++ A+GC    +    +LRY ++ I+ DAD DG HIA+LL   F +    L+++GH+Y+A
Sbjct: 464 ISVAIGCDPDSN-DISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIA 522

Query: 547 LPPLYRLSHGNKQVYARDDAHKDELLSKM---FKGKKPDISRFKGLGEMMPAQLRDTTMD 603
           +PPL+R+  G    YA DDA K+ +L ++    K  K  ++RFKGLGEM P QLR+TTMD
Sbjct: 523 MPPLFRIDIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMD 582

Query: 604 PSKRSLLRVVVPNAADPEEKPECERTRSLVEDLMGKR 640
           P+ R L+++ + +A         E T SL++ L+ K+
Sbjct: 583 PNTRRLVQLTIDDA---------EETDSLMDMLLAKK 610