Pairwise Alignments

Query, 183 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 176 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

 Score = 71.6 bits (174), Expect = 7e-18
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 25  HVPRLRRYATALVGNRPDADDLVQDCVEKALANRHALRDPSKLGGWLMTILHNLHISSQR 84
           H   LR YA     +  DA+DLVQD + KA+   +  ++ + L GWL TI+ N  I++ R
Sbjct: 13  HSVSLRSYALNFTKDAEDANDLVQDTMLKAITYYNKFKEGTNLKGWLFTIMKNTFINNYR 72

Query: 85  GRRRRGAEVPVEELADDLALSAPPADRGAVRDFV-----RAFAQLTDEHRTILLLTGMEG 139
              +    +   E      LS       A   FV     +A +QL +E+  +  +   EG
Sbjct: 73  RLVKTNTLITQSEDISSANLSYSATKNQAESKFVLGDIDKALSQLPEEY-YVPFIRYFEG 131

Query: 140 LSYREVAEVLELPIGTVMSRLARAREKLRVLLDGGTQQV 178
             Y E+A++L +PIGTV +R+  AR  L+  L   ++++
Sbjct: 132 YKYHEIADMLAIPIGTVKTRIHVARGILKKYLKTYSKEI 170