Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

 Score =  755 bits (1950), Expect = 0.0
 Identities = 460/1135 (40%), Positives = 644/1135 (56%), Gaps = 49/1135 (4%)

Query: 6    LQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLE 65
            L P  AG+   G  P    +  +AE A  A  + LL  A D      L + L+FFAP L 
Sbjct: 8    LLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTA-DSQSAERLEQELSFFAPDLP 66

Query: 66   VLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQK 125
            VL FP W+ LPYD  SP+  I+++RI +L RL            L+  +++  +   + +
Sbjct: 67   VLHFPDWETLPYDLFSPHQDIISQRIASLYRL----------PELSHGVLVVPITTALHR 116

Query: 126  VPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGT 185
            + P      +     +  ++D+E+++  L  +GY    TV E GEFAVRG ++DLFP G+
Sbjct: 117  LAPTQFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGS 176

Query: 186  EEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFG 245
            + P R+DLF DE+E +R FDP  QR+ DK  S+ L P  E  L    + RF++ +RE F 
Sbjct: 177  KLPYRIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFD 236

Query: 246  AVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRG--IVSLDHQANEARDARI 303
                  P+++ +S+G +  G+E++LPLF E   T+ DYLP+   + SL      A +   
Sbjct: 237  VDFRRCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFW- 295

Query: 304  AQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPG 363
                      D     E+R   P    +P A +FL          E   A+L+  S P  
Sbjct: 296  ---------NDVRNRYEERRVDPSRPLLPPAELFLP--------VEDCFARLK--SWPRV 336

Query: 364  IKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALR----ADGRRVLIAGYSAGSRDR 419
            +    D     G +    R  PD+ +       + AL     A   RVL    SAG R+ 
Sbjct: 337  VASQQDVETGVGRERFPARALPDLAIEAKATQPLAALAGFLDAFPGRVLFTAESAGRREV 396

Query: 420  LSNVLADHGIPGLEPAESMEDVRRFDRGIIGTIVLGMEHGFTSAD--LAVITEQDILGDR 477
            L  +L    +         + V   DR  +   +  +  G    D  LA++ E  + G R
Sbjct: 397  LLELLERLKLRPKTVDSWPDFVAGKDR--LAITIAPLNDGLVLDDPALALVAESPLFGQR 454

Query: 478  LV--RPAKKKRKAAN--FIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLI 533
            ++  R  +K+  AAN   I   + L EG  VVH+DHG+GRY GL TL++     + L L 
Sbjct: 455  VMQRRRREKRADAANDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLE 514

Query: 534  YEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIA 592
            Y  G KLYVPV N+ +++RY GS+DA   L +LG   WQ  K +  ++++D+A  LL I 
Sbjct: 515  YAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIY 574

Query: 593  AERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGF 652
            A R  ++      P+  Y+ F+A FP+ ET DQ   IE +  D+ + +PMDRLVCGDVGF
Sbjct: 575  ARRAAREGYAFADPKADYETFSAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGF 634

Query: 653  GKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQ 712
            GKTEVA+RAAF+    GKQVA++VPTTLLA+QH+ +F  RF   PV V  +SR  + +E 
Sbjct: 635  GKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEV 694

Query: 713  TLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVL 772
                 +LAEG  DIV+GTH LL   + FK LG+VI+DEE  FGV+QKE+LK LR+++ +L
Sbjct: 695  NAAVADLAEGKIDIVIGTHKLLQDDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDIL 754

Query: 773  TLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQS 832
            TLTATPIPRTL MA+SG+R+LS+IATPP  RL+VRTFV+  +   ++EA+LRE  RGGQ 
Sbjct: 755  TLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQV 814

Query: 833  FYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIE 892
            +Y+   V+ + K A  + ELVPE +I   HGQM   ELE VM+ F   +F VL+A+ IIE
Sbjct: 815  YYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIE 874

Query: 893  SGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHV 952
            +G+D+P+ANT+I+ RAD FGLAQL+Q+RGRVGRS  + YAYL   P + ++  A++RL  
Sbjct: 875  TGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEA 934

Query: 953  IETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQE 1012
            I     LGAGF LA++D++IRGAG LLG+ QSGQ++ VG  LY +MLE AV S R   Q 
Sbjct: 935  IANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQP 994

Query: 1013 GAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDR 1072
                        P+INL  P LIPE Y+PD+  RL LY+RIA   D   +     E+IDR
Sbjct: 995  NLDQPLGGG---PEINLRVPALIPEDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDR 1051

Query: 1073 FGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYI 1127
            FG LPE  +NL+    +K   +Q  I +VD GP G  + F      +P  L+  I
Sbjct: 1052 FGLLPEPTKNLVRTTLLKLKAEQLGIKKVDGGPNGGRIEFEAQTPVDPLVLIKLI 1106